Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PM1_RS00410 Genome accession   NZ_CP094343
Coordinates   88697..90184 (-) Length   495 a.a.
NCBI ID   WP_009614072.1    Uniprot ID   A0A1A5CXP9
Organism   Pseudomonas sp. M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 83697..95184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS00390 (MRY70_00390) - 84614..85666 (+) 1053 WP_009614078.1 hypothetical protein -
  PM1_RS00395 (MRY70_00395) - 85689..86501 (-) 813 WP_009614077.1 TlpA disulfide reductase family protein -
  PM1_RS00400 (MRY70_00400) - 86837..88288 (-) 1452 WP_009614076.1 PLP-dependent aminotransferase family protein -
  PM1_RS00405 (MRY70_00405) - 88463..88693 (+) 231 WP_009614075.1 DUF1127 domain-containing protein -
  PM1_RS00410 (MRY70_00410) comM 88697..90184 (-) 1488 WP_009614072.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PM1_RS00415 (MRY70_00415) - 90370..90636 (-) 267 WP_009614069.1 accessory factor UbiK family protein -
  PM1_RS00420 (MRY70_00420) - 90729..92759 (-) 2031 WP_009614068.1 acyltransferase family protein -
  PM1_RS00425 (MRY70_00425) glnK 93303..93641 (+) 339 WP_003457590.1 P-II family nitrogen regulator -
  PM1_RS00430 (MRY70_00430) - 93677..95011 (+) 1335 WP_009614064.1 ammonium transporter -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52211.85 Da        Isoelectric Point: 7.5468

>NTDB_id=669081 PM1_RS00410 WP_009614072.1 88697..90184(-) (comM) [Pseudomonas sp. M1]
MSLAIVHSRAQVGVEAPGVTVEAHLANGLPSLTLVGLPETAVKESKDRVRSAILNSGFEFPARRITLNLAPADLPKDGGR
FDLAIALGLLAANGQLAGASLDGLECLGELALSGALRPVQGVLPAALAARAAGRALVVPKENAEEASLASGLTVYAVGHL
LELAAHLTGQTPLAPYQARGLLRETPPYPDLAEVQGQAAAKRALLVAAAGSHNLLLSGPPGTGKTLLASRLPGLLPPLSE
DEALQVAAIHSVSGRGPLTHWPQRPFRQPHHSASAAALVGGGSRPQPGEITLAHEGVLFLDELPEFDRKVLEVLREPLEG
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQIQRYRAKLSGPLLDRIDLHLTVGRETTRLVPQNGS
LGSAEVAAQVASARERQLARQGCANAVLDLKSMHQNCALDDQDQAWLETAGERLDLSLRALHRILKVARTLADLEGAERI
ARSHLAEALQYRAGH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=669081 PM1_RS00410 WP_009614072.1 88697..90184(-) (comM) [Pseudomonas sp. M1]
ATGTCCCTGGCCATCGTCCACAGCCGCGCCCAGGTCGGCGTCGAGGCTCCCGGCGTCACCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCGTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCCATCC
TCAACTCCGGCTTCGAATTCCCCGCCCGACGCATCACCCTCAACCTCGCCCCGGCCGACCTGCCCAAGGACGGCGGACGC
TTCGACCTGGCCATCGCCCTGGGCCTGCTCGCCGCCAACGGCCAGTTGGCCGGCGCCAGCCTGGACGGCCTCGAATGCCT
CGGTGAACTGGCCCTGTCCGGCGCCCTGCGCCCGGTGCAGGGCGTGCTACCGGCCGCCCTGGCGGCGCGCGCCGCCGGCC
GCGCCCTGGTGGTGCCGAAGGAGAATGCCGAGGAAGCCAGCCTGGCCAGCGGCCTGACCGTCTACGCCGTCGGCCACCTG
CTGGAGCTGGCCGCGCACCTGACCGGCCAGACGCCCCTGGCGCCCTACCAGGCCCGCGGCCTGCTGCGGGAAACCCCGCC
CTACCCCGACCTCGCCGAGGTCCAGGGCCAGGCCGCGGCCAAGCGCGCCCTGCTGGTGGCCGCGGCCGGGTCGCACAACC
TGTTGCTGAGCGGCCCGCCGGGCACCGGCAAGACGCTGCTGGCCAGCCGCCTGCCGGGGTTGCTGCCGCCGCTGAGTGAA
GACGAGGCATTGCAGGTGGCGGCCATCCACTCCGTGTCCGGGCGCGGGCCGCTGACGCACTGGCCGCAGCGCCCGTTCCG
CCAGCCGCACCACAGCGCCTCGGCCGCCGCGCTGGTGGGTGGCGGCAGTCGGCCGCAACCCGGGGAGATCACCCTGGCCC
ACGAAGGCGTGCTATTTCTCGACGAGCTGCCGGAGTTCGATCGCAAGGTCCTGGAGGTCCTCCGCGAGCCCCTGGAAGGG
GGAGAAATCGTGATCGCCCGGGCCAACGGCCGGGTGCGCTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGGGCGACCCCAGCGGCCGCTGCCGTTGCACCCCGGAGCAGATCCAGCGCTACCGCGCCAAGCTCT
CCGGCCCGCTGCTGGACCGCATCGACCTGCACCTGACAGTGGGCCGCGAAACCACGCGTCTCGTCCCTCAGAATGGCAGC
CTGGGCAGCGCCGAGGTCGCCGCGCAGGTGGCCAGCGCCCGCGAGCGGCAACTGGCGCGGCAGGGTTGCGCGAACGCCGT
CCTCGACCTCAAGTCGATGCACCAAAACTGCGCACTGGACGATCAGGACCAGGCCTGGCTGGAAACCGCCGGCGAGCGCC
TGGACCTGTCCCTGCGCGCCCTGCACCGCATCCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAAGGCGCCGAACGCATC
GCCCGCTCGCACCTGGCCGAGGCCCTGCAATACCGCGCCGGGCACTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A5CXP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.056

100

0.572
  comM Vibrio campbellii strain DS40M4

56.855

100

0.57
  comM Haemophilus influenzae Rd KW20

55.01

100

0.566
  comM Glaesserella parasuis strain SC1401

54.059

100

0.552
  comM Legionella pneumophila str. Paris

50.099

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.099

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.322

100

0.471

Multiple sequence alignment