Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MQ090_RS00355 Genome accession   NZ_CP094301
Coordinates   70422..71942 (-) Length   506 a.a.
NCBI ID   WP_045426520.1    Uniprot ID   -
Organism   Edwardsiella anguillarum strain A20-09557     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 65422..76942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQ090_RS00335 (MQ090_00335) rfaF 65830..66891 (-) 1062 WP_034164509.1 ADP-heptose--LPS heptosyltransferase RfaF -
  MQ090_RS00340 (MQ090_00340) rfaD 66915..67844 (-) 930 WP_034164510.1 ADP-glyceromanno-heptose 6-epimerase -
  MQ090_RS00345 (MQ090_00345) - 68135..69331 (+) 1197 WP_034164511.1 glycine C-acetyltransferase -
  MQ090_RS00350 (MQ090_00350) tdh 69341..70366 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  MQ090_RS00355 (MQ090_00355) comM 70422..71942 (-) 1521 WP_045426520.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MQ090_RS00360 (MQ090_00360) - 72230..73465 (+) 1236 WP_034164513.1 MFS transporter -
  MQ090_RS00365 (MQ090_00365) ilvL 73593..73691 (+) 99 WP_071818493.1 ilv operon leader peptide -
  MQ090_RS00370 (MQ090_00370) ilvG 73829..75478 (+) 1650 WP_034164514.1 acetolactate synthase 2 catalytic subunit -
  MQ090_RS00375 (MQ090_00375) ilvM 75475..75765 (+) 291 WP_034164515.1 acetolactate synthase 2 small subunit -
  MQ090_RS00380 (MQ090_00380) - 75818..76747 (+) 930 WP_034164516.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53699.03 Da        Isoelectric Point: 9.2247

>NTDB_id=668710 MQ090_RS00355 WP_045426520.1 70422..71942(-) (comM) [Edwardsiella anguillarum strain A20-09557]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLSSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASGQLAPRISVGDYEFLGELALSGDLRPVQGALPAALSAARARRTLIAPSDNAAELGLLTAPRPPVAPS
LLAVCAFLSGQASLEAAPAGEMTSDCAGTGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLASPGAMPPRYGVRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAAPQVLRYLSRLSGPLLDRFDLSIDVPPLPPGQLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLIPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLTLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=668710 MQ090_RS00355 WP_045426520.1 70422..71942(-) (comM) [Edwardsiella anguillarum strain A20-09557]
ATGACTCTGGCCACTGTATACACGCGCGCCGCTCTGGGTATTCAAGCCCCCGAGGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTGCCGGGCTTTACCCTGGTGGGCCTGCCGGAAACGGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGC
TGAGCAGCGGGTTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCGCCCGCCGATCTGCCCAAGGAGGGGGGCCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCTGGGCAGCTGGCCCCGCGCATATCCGTTGGCGACTATGAATT
TCTCGGTGAACTGGCCCTGTCCGGCGATCTACGCCCGGTACAGGGGGCTCTACCCGCCGCGCTGAGCGCCGCCCGCGCGA
GGCGTACCCTGATAGCGCCCAGCGATAACGCGGCGGAACTCGGGCTGCTGACCGCCCCACGGCCCCCCGTCGCGCCGTCG
TTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTGGAGGCCGCGCCGGCCGGCGAAATGACGAGCGACTGCGC
CGGCACCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGGCGGGCGCTGGAGATCGCCGCCGCCGGTGGGCATA
ACCTGCTACTGATCGGACCGCCGGGCACCGGTAAAACCATGCTGGCCTGCCGCCTGCCGGGCCTGCTACCGCCGATGACT
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTGGCCTCCCCAGGTGCGATGCCACCACGCTATGGCGTGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGAGGGCCGCTGCCGAAGCCCGGCGAGATCTCGT
TGGCTCATCACGGCGTCCTGTTTCTTGACGAGCTGGCCGAATTCGACCGGCGAACCCTGGACGCCCTGCGCGAACCGCTG
GAGTCCGGCGTTGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGGGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCAGACGGACGCGATCGCCGGGCGGCAGCGCCGCAGGTGCTAAGATACCTTTCACGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATCGATGTTCCGCCGCTGCCACCGGGCCAGCTAGCCCGCCAACGGGCG
GATGGCGAAGACAGTGCGACCCTGCGCCGGCGGGTCTGCGCCGCCCGGGCGCGGCAGTACGCCCGCGGCGGCCGACTCAA
TGCGCATTTGGAGGGCGCCGCCCGCGACCGCGACTGCCGCCTGATACCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCCTGGCACCGGCTGCTGAAAGTCGCTCGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCCATGGATCGGCTGCTGCTCACCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Vibrio campbellii strain DS40M4

56.859

99.407

0.565
  comM Haemophilus influenzae Rd KW20

56.41

100

0.565
  comM Glaesserella parasuis strain SC1401

55.294

100

0.557
  comM Legionella pneumophila str. Paris

46.092

98.617

0.455
  comM Legionella pneumophila strain ERS1305867

46.092

98.617

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.307

100

0.435

Multiple sequence alignment