Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MQE04_RS25600 Genome accession   NZ_CP094272
Coordinates   5302455..5303975 (+) Length   506 a.a.
NCBI ID   WP_224147294.1    Uniprot ID   -
Organism   Klebsiella aerogenes strain NY1688     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5297455..5308975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE04_RS25580 (MQE04_25580) - 5299012..5299941 (-) 930 WP_008807980.1 branched-chain amino acid transaminase -
  MQE04_RS25585 (MQE04_25585) ilvM 5299961..5300218 (-) 258 WP_015368897.1 acetolactate synthase 2 small subunit -
  MQE04_RS25590 (MQE04_25590) ilvG 5300215..5301861 (-) 1647 WP_048231489.1 acetolactate synthase 2 catalytic subunit -
  MQE04_RS25595 (MQE04_25595) ilvL 5302002..5302100 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MQE04_RS25600 (MQE04_25600) comM 5302455..5303975 (+) 1521 WP_224147294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MQE04_RS25605 (MQE04_25605) - 5303999..5304337 (-) 339 WP_015368901.1 DUF413 domain-containing protein -
  MQE04_RS25610 (MQE04_25610) hdfR 5304456..5305277 (+) 822 WP_217074552.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55059.35 Da        Isoelectric Point: 7.6107

>NTDB_id=668548 MQE04_RS25600 WP_224147294.1 5302455..5303975(+) (comM) [Klebsiella aerogenes strain NY1688]
MSLAIVYTRAARGVSAPLITVEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYSFPAKKITINLAPADLPKEGGR
YDLPIALALLVASQQLAAPKLNQYEFIGELALTGALRGVPGAISSAMEAIKVGRQIVVAGDNAEEVGLINGNECLIAGHL
QEVCAFLEGKLTLQPPTGEITAGEDDYDDLGDVIGQQQGKRALEIVAAGGHNLLLMGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVNAHYVTRQWRRRPFRAPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKIHLSRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRATPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSRGGVGE
ERSATIRLRVFAARDRQLARQNKLNAQLDSGEIKVWCKLKEDDAIWLEQTLSLLGLSIRAWQRLLKVARTIADLNEDRDI
ERHHLQEALSYRAIDRMLNHLQTLMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=668548 MQE04_RS25600 WP_224147294.1 5302455..5303975(+) (comM) [Klebsiella aerogenes strain NY1688]
ATGTCACTCGCAATTGTCTATACCCGCGCGGCGCGCGGGGTCAGCGCGCCGCTAATTACCGTCGAAGTCCATATCAGCAA
CGGACTCCCTGGTTTGACGATGGTCGGCCTGCCGGAAACCACGGTAAAGGAAGCCCGCGATCGGGTACGTAGCGCCATTA
TTAACAGCGGCTACAGCTTTCCGGCAAAGAAGATAACCATAAACCTTGCCCCAGCCGATCTGCCGAAAGAGGGCGGGAGA
TATGATTTACCTATCGCTCTCGCGCTCCTGGTCGCTTCGCAGCAGCTTGCCGCCCCGAAACTTAATCAGTATGAGTTTAT
TGGCGAGTTAGCGCTTACAGGCGCGTTACGCGGCGTTCCTGGGGCAATATCCAGCGCTATGGAAGCGATAAAAGTCGGGA
GGCAGATTGTCGTTGCTGGAGATAACGCCGAAGAGGTCGGCTTGATTAACGGCAATGAGTGCCTTATAGCAGGGCACCTG
CAGGAAGTCTGTGCGTTTCTGGAAGGGAAACTTACTCTGCAGCCGCCGACTGGTGAAATAACTGCGGGAGAGGACGATTA
TGACGATCTCGGCGATGTCATTGGCCAACAGCAGGGAAAACGCGCGCTGGAGATAGTCGCAGCTGGCGGTCACAATTTAC
TTTTGATGGGTCCACCGGGTACAGGGAAGACGATGCTCGCCAGCCGTTTGCCGGGGCTTTTACCGCCACTAAGCAACCAG
GAAGCGCTGGAAAGTGCGGCTATCCTCAGCCTCGTCAATGCTCATTACGTTACGCGTCAGTGGCGTCGGCGGCCTTTTCG
CGCCCCTCACCACAGCGCTTCGCTAACGGCGATGGTCGGCGGCGGCTCAATCCCTGCCCCGGGGGAGATCTCCCTGGCGC
ATAACGGTATTCTGTTTCTTGATGAACTACCTGAATTCGAGCGTCGGGTTCTGGATGCACTACGAGAGCCCATTGAATCA
GGAAAAATTCATCTTTCCCGCACTCGGGCTAAGATTGACTATCCTGCGCGATTTCAGTTGATTGCCGCCATGAATCCCAG
CCCAACAGGACATTACCAGGGTCAGCATAATCGGGCCACACCGGAACAGACCCTGCGCTATCTGGGCCGATTGTCAGGGC
CATTTCTCGACCGCTTCGATCTCTCGCTTGAGATTCCACTCCCTCCACCGGGCGTATTAAGCCGGGGTGGCGTTGGCGAA
GAGCGAAGCGCCACCATTCGTCTACGGGTATTCGCGGCGCGCGACAGACAGCTCGCACGGCAGAATAAACTTAATGCACA
ACTGGACAGCGGGGAGATAAAAGTCTGGTGCAAGCTGAAAGAAGACGACGCGATATGGCTGGAACAGACGCTCTCACTAT
TAGGGCTTTCAATCCGCGCATGGCAACGTTTACTGAAAGTTGCGCGTACTATCGCCGATCTTAATGAGGATAGGGATATC
GAACGTCATCATTTGCAGGAGGCGCTAAGCTACCGGGCTATCGACCGTATGTTAAATCACCTGCAGACGCTGATGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.079

100

0.601
  comM Vibrio campbellii strain DS40M4

59.406

99.802

0.593
  comM Haemophilus influenzae Rd KW20

58.546

100

0.589
  comM Glaesserella parasuis strain SC1401

58.268

100

0.585
  comM Legionella pneumophila str. Paris

49.799

98.419

0.49
  comM Legionella pneumophila strain ERS1305867

49.799

98.419

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.443

Multiple sequence alignment