Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRP56_RS00560 Genome accession   NZ_CP094267
Coordinates   124981..126495 (-) Length   504 a.a.
NCBI ID   WP_073352180.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain A008N2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 119981..131495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRP56_RS00535 - 121170..121805 (-) 636 WP_073352188.1 nicotinamidase -
  MRP56_RS00540 - 121881..122531 (+) 651 WP_011707866.1 DNA mismatch repair protein MutT -
  MRP56_RS00545 - 122565..123050 (+) 486 WP_073352186.1 DUF523 domain-containing protein -
  MRP56_RS00550 - 122996..123952 (-) 957 WP_024945523.1 acyltransferase -
  MRP56_RS00555 - 123946..124860 (-) 915 WP_029302342.1 acyltransferase -
  MRP56_RS00560 comM 124981..126495 (-) 1515 WP_073352180.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRP56_RS00565 ilvG 126879..128525 (+) 1647 WP_073352178.1 acetolactate synthase 2 catalytic subunit -
  MRP56_RS00570 ilvM 128522..128773 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  MRP56_RS00575 - 128786..129730 (+) 945 WP_024945526.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54708.63 Da        Isoelectric Point: 7.4494

>NTDB_id=668478 MRP56_RS00560 WP_073352180.1 124981..126495(-) (comM) [Aeromonas hydrophila strain A008N2]
MSLAVVYSRASLGVAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDPQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRERVLAARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRQAI
EKEHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=668478 MRP56_RS00560 WP_073352180.1 124981..126495(-) (comM) [Aeromonas hydrophila strain A008N2]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCTTAGGTGTCGCGGCCCCGCAAGTGACGGTGGAGGTGCACCTCTCCAA
CGGTTTGCCCGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGAGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGCGAATTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTACTACCCGCCGTGCTCGCCTGCCGGGATGCGGGTC
GCACCCTGCTGGTACCGCGAGAGAACGGTCCCGAAGCCTCGCTGATCCAGGACGCCGAGGTGCGCACCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAGCTGCCGCTGCCGGATCCCCAGACCACGGATGCCCTGCCCGATGT
GCCGGACCTGCAGGACGTGATCGGCCAGTCCCAGGCCAAGCGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCCAGCCGCTTGCCCGGCATCTTGCCGCCGCTGAGCGAACAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGGCCCTATCG
CACACCCCACCACAGCGCCTCGGCGGTGGCGCTGGTGGGGGGTGGCAGTCACCCAAGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCTTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAAGTACCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGAGCGGGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTTGATAGCCGTGAAATTGAAGAAATTTGCCGCTTATCGCCACAGGATGCCGAGTTTCTGGAGAATGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGTATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCAGGACGGCAGGCCATC
GAGAAGGAGCACCTGATCGAGGCGCTCGGCTACCGGGCCATGGACCGGCTGCTGTCACGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Vibrio campbellii strain DS40M4

62.351

99.603

0.621
  comM Haemophilus influenzae Rd KW20

61.858

100

0.621
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466

Multiple sequence alignment