Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MOW12_RS01165 Genome accession   NZ_CP094254
Coordinates   246782..248272 (-) Length   496 a.a.
NCBI ID   WP_242911895.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT2076     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 241782..253272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW12_RS01140 (MOW12_01140) - 242225..242611 (-) 387 WP_075167837.1 hypothetical protein -
  MOW12_RS01145 (MOW12_01145) - 242715..243116 (+) 402 WP_005181530.1 MAPEG family protein -
  MOW12_RS01150 (MOW12_01150) ppa 243234..243758 (+) 525 WP_005181532.1 inorganic diphosphatase -
  MOW12_RS01155 (MOW12_01155) - 243861..245189 (-) 1329 WP_005181539.1 OprD family outer membrane porin -
  MOW12_RS01160 (MOW12_01160) - 245947..246708 (+) 762 WP_127801551.1 TorF family putative porin -
  MOW12_RS01165 (MOW12_01165) comM 246782..248272 (-) 1491 WP_242911895.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MOW12_RS01170 (MOW12_01170) - 248342..248569 (-) 228 WP_005181545.1 accessory factor UbiK family protein -
  MOW12_RS01175 (MOW12_01175) glnK 248846..249184 (+) 339 WP_004650081.1 P-II family nitrogen regulator -
  MOW12_RS01180 (MOW12_01180) - 249247..250650 (+) 1404 WP_152342158.1 ammonium transporter -
  MOW12_RS01185 (MOW12_01185) nrdR 250790..251248 (+) 459 WP_005181550.1 transcriptional regulator NrdR -
  MOW12_RS01190 (MOW12_01190) ribD 251272..252360 (+) 1089 WP_152342159.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54128.28 Da        Isoelectric Point: 7.7888

>NTDB_id=668371 MOW12_RS01165 WP_242911895.1 246782..248272(-) (comM) [Acinetobacter indicus strain BDT2076]
MSFAKIYTRGLLGLNAPSIEVEVHLSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPKQAAENLEFIGELALDGQLRPVTGTLSIAIACQAAGHQLVLPEPNAQEAAQLPDFQVFAASHL
KQVCEHLAQAAPLQPFAASSETRLERYAFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNM
QENLEVASIYSIANTPHRFGQRPFRAPHHTASAIALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPASFQLIAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALTPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAESSEIQ
TAHLSEALSYRVQPSP

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=668371 MOW12_RS01165 WP_242911895.1 246782..248272(-) (comM) [Acinetobacter indicus strain BDT2076]
ATGTCTTTTGCCAAAATTTATACGCGGGGTCTGCTTGGACTGAATGCCCCGTCCATTGAAGTTGAAGTCCATTTAAGTCA
GGGTCTGCCCTCCTTAACCATTGTCGGTCTGGCCGAAGCCGCGGTCCGTGAAAGTAAAGACCGGGTTCGCTCGGCCATTA
TTAACAGTGGTTTTCAGTTTCCCACCAAACGTTTGACCATTAATCTGGCCCCGGCCGATTTACCCAAAGATGGCTCACGT
CTGGATTTACCGATTGCCTTAGGCATTCTGATTGCTTCCGGACAATTGCCCAAACAGGCCGCAGAAAACCTGGAATTTAT
TGGTGAACTGGCGCTGGATGGCCAATTGCGTCCGGTCACCGGCACTTTAAGTATTGCCATTGCCTGTCAGGCGGCCGGCC
ATCAACTGGTATTACCCGAACCCAATGCACAGGAAGCCGCACAATTGCCCGACTTTCAGGTGTTTGCGGCCAGTCATCTG
AAACAGGTCTGTGAGCATCTGGCGCAGGCTGCGCCGCTGCAGCCTTTTGCAGCAAGCTCGGAAACCCGTTTGGAACGCTA
TGCTTTTGATCTGGCGGATGTCAAAGGACAGCTGCGACCTCGGCGCGCCCTAGAAATTGCCGCTGCCGGTGGCCATTCCT
TGCTCTTTAAAGGTCCACCCGGTACAGGCAAGACTCTCTTGGCCTCACGTCTGGCCAGTATTTTGCCGCCCCTGAATATG
CAGGAAAATCTTGAAGTTGCCAGTATCTATTCAATTGCCAATACCCCACATCGCTTTGGACAGCGGCCATTTCGCGCCCC
GCATCATACCGCTTCAGCGATTGCACTGGTCGGTGGTGGCTCGCATCCGAAACCGGGCGAAATTACCCTGGCTCATTTAG
GTGTGCTGTTTTTAGATGAACTGCCGGAGTTTGACCGTAAAGTGCTGGAAGTATTGCGGCAGCCCTTGGAATCCAAAGAA
ATTGTGATTTCCCGGGCATCGCGGCAGATTACCTTTCCGGCCAGTTTCCAGCTGATTGCCGCGATGAACCCCTGCCCGTG
TGGCTATGCGTTTAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AACCCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATCGGGTCTTAAGGGTGGCGCGCAGTATTGCCGATTTGGCCGAAAGTAGCGAAATTCAG
ACCGCTCATTTATCGGAAGCGCTGTCTTATCGGGTGCAGCCCAGCCCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.4

100

0.518
  comM Glaesserella parasuis strain SC1401

51.102

100

0.514
  comM Vibrio cholerae strain A1552

50.909

99.798

0.508
  comM Vibrio campbellii strain DS40M4

50.909

99.798

0.508
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.506
  comM Legionella pneumophila str. Paris

50.605

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.468

Multiple sequence alignment