Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   MON37_RS10230 Genome accession   NZ_CP094242
Coordinates   2185535..2185825 (-) Length   96 a.a.
NCBI ID   WP_039410811.1    Uniprot ID   -
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2174937..2184747 2185535..2185825 flank 788


Gene organization within MGE regions


Location: 2174937..2185825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS10190 (MON37_10190) - 2174937..2175902 (+) 966 WP_242883652.1 IS30 family transposase -
  MON37_RS10195 (MON37_10195) - 2175984..2176916 (-) 933 WP_039410561.1 AEC family transporter -
  MON37_RS10200 (MON37_10200) - 2177587..2179818 (+) 2232 WP_039410565.1 YadA C-terminal domain-containing protein -
  MON37_RS10205 (MON37_10205) - 2179969..2180934 (-) 966 WP_242883654.1 IS30 family transposase -
  MON37_RS10210 (MON37_10210) - 2181135..2182448 (+) 1314 WP_039409833.1 NCS2 family permease -
  MON37_RS10215 (MON37_10215) - 2182792..2183757 (+) 966 WP_242883656.1 IS30 family transposase -
  MON37_RS10220 (MON37_10220) - 2183728..2184747 (-) 1020 WP_242883658.1 IS5 family transposase -
  MON37_RS10225 (MON37_10225) comP 2184897..2185361 (-) 465 WP_039410813.1 type IV pilin protein Machinery gene
  MON37_RS10230 (MON37_10230) comE 2185535..2185825 (-) 291 WP_039410811.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10018.68 Da        Isoelectric Point: 10.5400

>NTDB_id=668365 MON37_RS10230 WP_039410811.1 2185535..2185825(-) (comE) [Morococcus cerebrosus strain CIP 81.93]
MKKFLFAALSVLTASLSLAAVNINTASPSELEALPGIGPAKAKAIADYRQQHGAFKSVEELKNVKGIGEGIFSKLKTEAT
VAPAPANPKAKNTIQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=668365 MON37_RS10230 WP_039410811.1 2185535..2185825(-) (comE) [Morococcus cerebrosus strain CIP 81.93]
ATGAAAAAATTCCTCTTTGCCGCACTCTCCGTTCTGACCGCCTCGCTGTCGCTGGCCGCCGTCAACATCAATACCGCCTC
CCCGTCCGAATTGGAAGCCCTGCCCGGCATCGGTCCGGCCAAAGCCAAAGCCATTGCGGACTACCGTCAGCAGCACGGTG
CCTTTAAATCGGTTGAGGAGCTCAAAAACGTCAAAGGCATCGGCGAGGGTATCTTCTCCAAACTGAAGACCGAAGCAACC
GTCGCTCCCGCACCTGCCAACCCAAAAGCTAAAAACACTATTCAAAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

61.798

92.708

0.573
  comE Neisseria gonorrhoeae MS11

61.798

92.708

0.573
  comE Neisseria gonorrhoeae MS11

61.798

92.708

0.573
  comE Neisseria gonorrhoeae MS11

61.798

92.708

0.573
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.086

84.375

0.448
  comEA Vibrio parahaemolyticus RIMD 2210633

45.349

89.583

0.406

Multiple sequence alignment