Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   MON37_RS10225 Genome accession   NZ_CP094242
Coordinates   2184897..2185361 (-) Length   154 a.a.
NCBI ID   WP_039410813.1    Uniprot ID   -
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2174937..2184747 2184897..2185361 flank 150


Gene organization within MGE regions


Location: 2174937..2185361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS10190 (MON37_10190) - 2174937..2175902 (+) 966 WP_242883652.1 IS30 family transposase -
  MON37_RS10195 (MON37_10195) - 2175984..2176916 (-) 933 WP_039410561.1 AEC family transporter -
  MON37_RS10200 (MON37_10200) - 2177587..2179818 (+) 2232 WP_039410565.1 YadA C-terminal domain-containing protein -
  MON37_RS10205 (MON37_10205) - 2179969..2180934 (-) 966 WP_242883654.1 IS30 family transposase -
  MON37_RS10210 (MON37_10210) - 2181135..2182448 (+) 1314 WP_039409833.1 NCS2 family permease -
  MON37_RS10215 (MON37_10215) - 2182792..2183757 (+) 966 WP_242883656.1 IS30 family transposase -
  MON37_RS10220 (MON37_10220) - 2183728..2184747 (-) 1020 WP_242883658.1 IS5 family transposase -
  MON37_RS10225 (MON37_10225) comP 2184897..2185361 (-) 465 WP_039410813.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17343.87 Da        Isoelectric Point: 8.8550

>NTDB_id=668364 MON37_RS10225 WP_039410813.1 2184897..2185361(-) (comP) [Morococcus cerebrosus strain CIP 81.93]
MNKENCKGYSLTQLIFVIAIIGILTSIAYPSYQKYIRDSEIRQALAALVESAQFMERFYQQNGSFKKTSTAWPDLPNSRS
LENFCIYPHGLARGALDGKFTLKAVALDKNKEPRVIKINESLTTFICESTASSCDDVKKNYFSGADKNCSVYRL

Nucleotide


Download         Length: 465 bp        

>NTDB_id=668364 MON37_RS10225 WP_039410813.1 2184897..2185361(-) (comP) [Morococcus cerebrosus strain CIP 81.93]
ATGAATAAAGAAAATTGTAAAGGGTATTCTCTTACTCAATTAATCTTTGTAATTGCAATAATTGGGATTTTAACTTCAAT
AGCTTATCCAAGCTATCAAAAATATATTAGAGACTCTGAAATACGTCAGGCTCTGGCAGCGCTTGTTGAGAGTGCTCAGT
TTATGGAACGATTTTATCAGCAGAATGGTAGTTTCAAGAAAACTTCTACAGCGTGGCCTGATTTGCCTAACTCTCGGAGT
TTAGAAAACTTTTGTATTTATCCTCATGGGCTTGCAAGGGGCGCGTTAGATGGGAAATTTACTTTAAAGGCAGTTGCATT
GGATAAAAATAAAGAACCTAGGGTAATAAAGATTAATGAATCTCTAACGACTTTTATTTGTGAGAGTACTGCTAGTTCTT
GTGATGATGTTAAGAAAAACTATTTTTCTGGTGCAGATAAAAACTGTTCCGTATATCGGCTTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(30-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria meningitidis 8013

53.061

95.455

0.506
  comP Neisseria gonorrhoeae MS11

53.061

95.455

0.506
  comP Neisseria subflava NJ9703

47.297

96.104

0.455

Multiple sequence alignment