Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MON40_RS11805 Genome accession   NZ_CP094241
Coordinates   2466795..2468930 (-) Length   711 a.a.
NCBI ID   WP_003776207.1    Uniprot ID   A0AA36XLW8
Organism   Neisseria macacae ATCC 33926     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2461795..2473930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS11775 (MON40_11775) - 2461905..2463062 (+) 1158 WP_003776218.1 class I SAM-dependent methyltransferase -
  MON40_RS11790 (MON40_11790) - 2463595..2464603 (-) 1009 Protein_2282 IS5 family transposase -
  MON40_RS11795 (MON40_11795) aroB 2464891..2465970 (-) 1080 WP_003776214.1 3-dehydroquinate synthase -
  MON40_RS11800 (MON40_11800) - 2466056..2466568 (-) 513 WP_301185886.1 shikimate kinase -
  MON40_RS11805 (MON40_11805) pilQ 2466795..2468930 (-) 2136 WP_003776207.1 type IV pilus secretin PilQ Machinery gene
  MON40_RS11810 (MON40_11810) pilP 2468948..2469514 (-) 567 WP_003765902.1 pilus assembly protein PilP Machinery gene
  MON40_RS11815 (MON40_11815) pilO 2469532..2470224 (-) 693 WP_003765893.1 type 4a pilus biogenesis protein PilO -
  MON40_RS11820 (MON40_11820) pilN 2470225..2470842 (-) 618 WP_003759517.1 PilN domain-containing protein Machinery gene
  MON40_RS11825 (MON40_11825) pilM 2470844..2471953 (-) 1110 WP_003776205.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 711 a.a.        Molecular weight: 77757.03 Da        Isoelectric Point: 9.6387

>NTDB_id=668320 MON40_RS11805 WP_003776207.1 2466795..2468930(-) (pilQ) [Neisseria macacae ATCC 33926]
MKTKHMTKFFASIGVAMAVQTAFAGNITDINVSTLPDSQKIIKIRFDRDVTSPSGFVTSAPARIALDFANTTIRLPQSVL
EYADPLLNQITAAQNNDRSRIVLGLNKTAQYNTEIHGNEVWVFVSESADRNSAMSVSNNKPSMQDSVPSEKAKQVANSAN
IDFRKGSRNSGVVELSVPTFTGQPDIKQQRDRVIITLKNYPLPTQTQRSLDVGDFNTPVKNITLKRIGNDTQLIIRNSAN
WEVRTKPAAGHFTFEILPKAADTESRGLNGGNANKSFNGRKISLDFQDVEVRTILQILAKESGVNIVASDTVNGKMTLSL
KDVPWDQALDLVMQARNLDMRRQGNIINIAPRDELLAKDKAFLQAEKEIAELGPLYSQTFQLKYKNVEEFRKILRLEDNG
SSNSNGRNTLLSGRGSALIDPATNTLIVTDNRNVIEKFRKLIDELDVPTRQVMVEARIVEAKDGFSRDLGVKFGAAGARG
RNSWGNDWSAAQNNHNTNASVFRGESAYPTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISNPRV
LTQDRREATIESGTEIPYQEASSSGATSVSFKKAVLGLTVTPNVTPDGQIIMTVKITKDTPVDCTVDSLITKCIQTKNLN
TQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPVVGNLFKSRAKKEERRELLIFITPRIMDGVGSNLRY

Nucleotide


Download         Length: 2136 bp        

>NTDB_id=668320 MON40_RS11805 WP_003776207.1 2466795..2468930(-) (pilQ) [Neisseria macacae ATCC 33926]
ATGAAAACTAAGCACATGACAAAATTTTTTGCCAGTATTGGCGTAGCCATGGCTGTGCAAACTGCTTTTGCAGGTAATAT
TACTGATATTAATGTATCTACTCTTCCTGATAGTCAAAAAATTATCAAAATCCGTTTTGATCGTGATGTAACCAGTCCGA
GCGGTTTTGTTACTTCGGCTCCAGCTAGAATTGCACTTGATTTTGCTAACACTACTATTCGATTGCCTCAATCAGTATTG
GAGTATGCTGACCCGTTATTAAATCAGATTACGGCGGCACAAAATAATGACCGTTCCCGTATTGTGTTGGGTTTGAATAA
AACTGCCCAATATAATACTGAAATTCATGGTAATGAAGTTTGGGTTTTTGTTAGTGAGTCAGCTGACCGAAATTCTGCAA
TGTCTGTATCAAATAATAAACCTTCTATGCAGGATTCTGTTCCGTCAGAAAAAGCAAAGCAAGTCGCTAATTCCGCTAAT
ATCGACTTCCGTAAGGGCTCGCGCAATTCAGGTGTTGTTGAATTAAGCGTTCCGACTTTTACTGGACAGCCTGATATTAA
ACAACAGCGTGATCGTGTCATCATTACATTGAAAAACTATCCGTTGCCAACACAAACACAACGTAGTTTGGATGTAGGTG
ATTTTAATACGCCGGTAAAAAATATCACTTTAAAACGCATCGGTAATGATACTCAGCTGATTATTCGAAATAGTGCAAAC
TGGGAAGTTCGTACTAAGCCGGCAGCAGGGCATTTTACTTTTGAAATTTTACCTAAAGCCGCTGATACGGAGTCACGTGG
TTTGAATGGTGGTAATGCAAATAAATCTTTCAATGGTCGTAAAATTTCTCTAGATTTCCAAGATGTTGAAGTTCGTACTA
TTCTGCAGATTCTTGCAAAAGAGTCAGGCGTCAATATTGTGGCTAGCGATACGGTAAATGGTAAGATGACTTTATCCCTC
AAGGATGTGCCTTGGGATCAGGCATTGGACTTGGTAATGCAAGCCCGTAATTTGGATATGCGTCGTCAAGGTAATATCAT
CAATATTGCTCCACGTGATGAATTGTTGGCGAAGGATAAGGCCTTCTTGCAAGCAGAAAAAGAAATTGCAGAGCTTGGTC
CTTTGTATTCGCAAACCTTCCAATTGAAATATAAAAATGTGGAGGAGTTCCGCAAAATCCTTCGTTTGGAAGATAATGGA
AGTAGCAATTCCAATGGTCGCAATACCTTGTTGAGCGGCCGAGGCAGTGCTTTGATTGACCCCGCAACGAATACCTTGAT
TGTTACAGATAATCGGAACGTCATCGAGAAATTCCGTAAATTGATTGATGAGTTGGATGTTCCTACACGTCAAGTTATGG
TTGAAGCGCGCATTGTAGAAGCAAAAGATGGATTCTCACGCGATTTGGGCGTTAAGTTTGGTGCTGCTGGTGCAAGAGGA
AGAAACTCTTGGGGCAATGATTGGTCAGCTGCTCAGAATAACCACAATACTAACGCCTCAGTGTTCCGCGGAGAGTCTGC
TTATCCAACTTGGTCTTTGCAGCCTAACGTAAGTTTGCCTGCTACAGCGGCGACGAACAGTATCGCTTTAGTACGAGCCT
TGTCATCTGGTGCATTAGGTTTGGAAATCTCTGCTTCTGAAGCAACTGGTAAGAGCAAAACCATTTCTAATCCTCGCGTT
CTGACTCAGGATCGTCGAGAAGCTACGATTGAATCCGGTACCGAAATTCCTTACCAAGAAGCTTCTTCAAGCGGTGCGAC
TTCGGTTTCATTCAAAAAAGCGGTTTTGGGTCTGACAGTTACTCCTAATGTAACTCCGGATGGTCAAATTATTATGACCG
TTAAGATCACTAAAGATACTCCGGTCGACTGTACTGTAGATTCTTTGATAACCAAGTGTATTCAGACTAAGAACTTGAAT
ACTCAGGCTATGGTTGAAGATGGTGGCACTTTGATCGTTGGTGGTATCTATGAAGAGGACAATAGCGATACCATTAATAA
AGTTCCATTGCTTGGTGATATTCCTGTAGTAGGAAACTTGTTTAAATCACGAGCCAAGAAAGAAGAACGACGCGAATTGT
TGATTTTCATAACGCCTCGCATTATGGATGGCGTGGGTAGTAATTTGCGTTATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(304-351)

AMIN domain (AMIN)

(40-122)

Bacterial type II and III secretion system protein (Secretin)

(546-703)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

63.908

100

0.662
  pilQ Neisseria meningitidis MC58

69.604

78.2

0.544
  pilQ Neisseria meningitidis M1080

69.604

78.2

0.544

Multiple sequence alignment