Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MPZ60_RS01040 Genome accession   NZ_CP094238
Coordinates   240396..241934 (+) Length   512 a.a.
NCBI ID   WP_242881948.1    Uniprot ID   -
Organism   Comamonas sp. 7D-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 235396..246934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPZ60_RS01020 (MPZ60_01020) - 236121..237449 (-) 1329 WP_034351426.1 sulfatase -
  MPZ60_RS01025 (MPZ60_01025) - 237563..238555 (-) 993 WP_034351428.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  MPZ60_RS01030 (MPZ60_01030) - 238696..239667 (-) 972 WP_012836691.1 tripartite tricarboxylate transporter substrate binding protein -
  MPZ60_RS01035 (MPZ60_01035) - 239760..240311 (+) 552 WP_034351431.1 MarR family winged helix-turn-helix transcriptional regulator -
  MPZ60_RS01040 (MPZ60_01040) comM 240396..241934 (+) 1539 WP_242881948.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MPZ60_RS01045 (MPZ60_01045) - 241948..242877 (-) 930 WP_034351607.1 LysR substrate-binding domain-containing protein -
  MPZ60_RS01050 (MPZ60_01050) - 242988..244166 (+) 1179 WP_034351451.1 YbfB/YjiJ family MFS transporter -
  MPZ60_RS01055 (MPZ60_01055) - 244201..245268 (+) 1068 WP_034351452.1 nitronate monooxygenase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54820.70 Da        Isoelectric Point: 7.0033

>NTDB_id=668233 MPZ60_RS01040 WP_242881948.1 240396..241934(+) (comM) [Comamonas sp. 7D-2]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNQRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
AHLLDVVRQFIAHDATLSEQGDDVEGWQRVHSRPAEASLPSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSIALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRIRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALQRQGLPNHQLQGAQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQTHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=668233 MPZ60_RS01040 WP_242881948.1 240396..241934(+) (comM) [Comamonas sp. 7D-2]
ATGGGTCTGGCACTGGTTCAAAGTCGTGCACTGCTGGGCTTGCAGGCACCGGCTGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACCCTGGTGGGTCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGCGCAGCCATCG
TCAATGCGGGGCTGGAGTTCCCGAACAATCAGCGCATCACGGTCAATCTGGCTCCGGCGGATCTGCCCAAGGATTCAGGC
CGCTTTGATCTGCCGATAGCGCTGGGCATTTTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCGCTGACCGGTGCCCTGCGCCCGGTACGCGGCGCCCTGGCTACTGCGCTGGCCCTGCAGCGTCAGC
AGCAGCGCGTGCGGCTGGTGCTGCCGCCAGACAGTGCGCTGGAGGCCGCCTTTGTGCCGGCCATCGAAGTCTTCGGCGCC
GCGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCACCCTGTCGGAGCAGGGCGATGACGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCTTCTTTGCCGTCGCTGGATCTGCGCGAGGTGCGCGGCCAGATGCAGGCCA
AGCGCGCGCTTGAAATTGCAGCTGCCGGCGCTCACGGTGTGCTGATGATCGGCCCTCCTGGTTCGGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCAGGCATGACCGATGAGGAAGCGCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGCTGTGGCGCCAGCGGCCATTTGCCGCTCCTCATCACACGGCCAGTTCCATCGCGTTGGTCGGCG
GCGGCTCTCCGCCCCGGCCCGGCGAAATCTCCTATGCCCATTGCGGGGCGCTTTTCCTGGATGAGCTGCCCGAGTTCGCG
CGCAGCGCCCTGGAGGCTCTGCGAGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCCCGTTTTCAGCTGGTGGCAGCCATGAACCCCTGCCCCTGCGGTTACTGGGGCTCGCGCATCAGGGCCTGCCGCT
GCTCGCCCGATCAGGTGGCACGTTATCAGGCACGCATCAGCGGTCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGTTGCTGGCAGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGCGCGGC
CAGGGACAAGGCCTTGCAGCGTCAGGGCCTGCCCAATCATCAGTTGCAGGGGGCACAGCTCGACACGCATCTGCAACTGG
AGCCCGAGGCGCTGACCTTTGCCCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCGCGCGGCACGCACCGGGCGTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAACCCATCTGGCCGAGGCATTGCAGTACCGCCG
CGCGCTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.137

99.609

0.529
  comM Vibrio campbellii strain DS40M4

51.373

99.609

0.512
  comM Haemophilus influenzae Rd KW20

50.984

99.219

0.506
  comM Glaesserella parasuis strain SC1401

49.511

99.805

0.494
  comM Legionella pneumophila str. Paris

47.5

100

0.482
  comM Legionella pneumophila strain ERS1305867

47.5

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.529

99.609

0.434

Multiple sequence alignment