Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MOO48_RS23740 Genome accession   NZ_CP094227
Coordinates   4944010..4945530 (+) Length   506 a.a.
NCBI ID   WP_004181640.1    Uniprot ID   A0A0C7KD86
Organism   Klebsiella pneumoniae strain Bio3     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4939010..4950530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO48_RS23720 (MOO48_23720) ilvE 4940570..4941499 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  MOO48_RS23725 (MOO48_23725) ilvM 4941516..4941773 (-) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  MOO48_RS23730 (MOO48_23730) ilvG 4941770..4943416 (-) 1647 WP_002883142.1 acetolactate synthase 2 catalytic subunit -
  MOO48_RS23735 (MOO48_23735) ilvL 4943557..4943655 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MOO48_RS23740 (MOO48_23740) comM 4944010..4945530 (+) 1521 WP_004181640.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MOO48_RS23745 (MOO48_23745) - 4945556..4945894 (-) 339 WP_004146520.1 DUF413 domain-containing protein -
  MOO48_RS23750 (MOO48_23750) hdfR 4946013..4946834 (+) 822 WP_004181639.1 HTH-type transcriptional regulator HdfR -
  MOO48_RS23760 (MOO48_23760) umuD 4947092..4947517 (+) 426 WP_004178083.1 translesion error-prone DNA polymerase V autoproteolytic subunit -
  MOO48_RS23765 (MOO48_23765) - 4947517..4948788 (+) 1272 WP_004152715.1 Y-family DNA polymerase -
  MOO48_RS23770 (MOO48_23770) - 4948927..4949082 (+) 156 WP_001776126.1 hypothetical protein -
  MOO48_RS23775 (MOO48_23775) - 4949105..4950303 (-) 1199 Protein_4683 transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55186.61 Da        Isoelectric Point: 8.6038

>NTDB_id=668158 MOO48_RS23740 WP_004181640.1 4944010..4945530(+) (comM) [Klebsiella pneumoniae strain Bio3]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKINYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGSQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEVEEI
ERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=668158 MOO48_RS23740 WP_004181640.1 4944010..4945530(+) (comM) [Klebsiella pneumoniae strain Bio3]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAATCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCGCTGGAGAGCGCGGCCATACAGAGTCTGGTCAACCTCCACACCGCAAAGACGCGGTGGCGTCAGAGGCCGTTCCG
CGCCCCCCACCATAGCGCCTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCA
GGCAAGATCCACATATCACGCTCGCGCGCCAAAATTAATTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAG
CCCGACAGGACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCC
CCTTCCTCGACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCGCCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAA
GAATCGAGCGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCA
TCTTGAGAATCGTGAAATGAAGAACTGCTGTCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTTTCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATT
GAACGCTGTCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C7KD86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.078

100

0.607
  comM Glaesserella parasuis strain SC1401

59.725

100

0.601
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Legionella pneumophila str. Paris

50.201

98.419

0.494
  comM Legionella pneumophila strain ERS1305867

50.201

98.419

0.494
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.449

Multiple sequence alignment