Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MP387_RS05290 Genome accession   NZ_CP094226
Coordinates   1086507..1087463 (-) Length   318 a.a.
NCBI ID   WP_242745561.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1081507..1092463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS05270 (MP387_05270) - 1081550..1082773 (-) 1224 WP_216728409.1 FtsW/RodA/SpoVE family cell cycle protein -
  MP387_RS05275 (MP387_05275) prsA 1082962..1083903 (-) 942 WP_000728083.1 peptidylprolyl isomerase PrsA -
  MP387_RS05280 (MP387_05280) - 1083971..1084684 (-) 714 WP_242745558.1 O-methyltransferase -
  MP387_RS05285 (MP387_05285) pepF 1084686..1086488 (-) 1803 WP_242745560.1 oligoendopeptidase F Regulator
  MP387_RS05290 (MP387_05290) coiA 1086507..1087463 (-) 957 WP_242745561.1 competence protein CoiA family protein Machinery gene
  MP387_RS05295 (MP387_05295) - 1087540..1088688 (-) 1149 WP_242745563.1 hypothetical protein -
  MP387_RS05300 (MP387_05300) tehB 1088866..1089726 (-) 861 WP_242745566.1 SAM-dependent methyltransferase TehB -
  MP387_RS05305 (MP387_05305) smpB 1089741..1090208 (-) 468 WP_001051742.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 37697.04 Da        Isoelectric Point: 9.1634

>NTDB_id=668108 MP387_RS05290 WP_242745561.1 1086507..1087463(-) (coiA) [Streptococcus oralis strain 1648]
MFVARDAKGNLVNALEKDVTRQAYTCPACGGGLRLRQGQSIRTHFAHESLRDCMAIFENESPEHLGNKEALYHWAKKNNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSSLSQKLLGDRSQGYRSQDYQVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDIKKQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLASLTVSQDSTICHYIRQQLYYQTPYWM
KKQEEAYHQGDNLLKHQLDDWYPQVRPIESGDFLQIETDLASYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=668108 MP387_RS05290 WP_242745561.1 1086507..1087463(-) (coiA) [Streptococcus oralis strain 1648]
ATGTTTGTAGCCAGAGATGCCAAGGGGAATTTGGTAAATGCCCTCGAAAAAGATGTTACCAGGCAAGCTTATACCTGCCC
CGCCTGTGGGGGCGGACTACGATTACGCCAAGGACAGAGCATTCGAACGCATTTCGCCCATGAATCTTTAAGAGATTGTA
TGGCTATTTTTGAGAATGAAAGTCCAGAACACTTGGGCAACAAAGAGGCACTTTATCACTGGGCCAAGAAGAACAATCAG
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAAAAACTAGCTCTGGAGGTTCA
GTGCAGTTCCTTGTCTCAAAAGCTTTTAGGCGATAGAAGCCAAGGATACCGTAGCCAAGACTATCAGGTTATCTGGCTAC
TGGGAGAAAAACTCTGGTTAAAAGAGCGATTAACACAATTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGATTT
TATGTTTGGGAACTGGATATCAAAAAGCAAGTTTTGAGACTCAAATATCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAGGAATTTCCCTATGGCCAAGGAAATCTCTTGGAAATTCTACGATTTCCTTATCAAAAACAAAAGCTAG
CTAGTCTTACAGTTTCTCAAGATTCAACTATCTGTCACTACATTCGCCAACAGTTGTACTACCAAACGCCTTACTGGATG
AAGAAGCAAGAAGAGGCCTATCATCAAGGAGACAATCTATTAAAGCATCAACTAGACGACTGGTATCCTCAAGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGGCTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

70.755

100

0.708
  coiA Streptococcus pneumoniae D39

70.755

100

0.708
  coiA Streptococcus pneumoniae R6

70.755

100

0.708
  coiA Streptococcus mitis NCTC 12261

70.755

100

0.708
  coiA Streptococcus pneumoniae TIGR4

70.44

100

0.704
  coiA Lactococcus lactis subsp. cremoris KW2

41.846

100

0.428

Multiple sequence alignment