Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG16_RS00745 | Genome accession | NZ_CP094143 |
| Coordinates | 160048..161184 (+) | Length | 378 a.a. |
| NCBI ID | WP_245108599.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe032 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 155048..166184
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG16_RS00710 (MPG16_00710) | panD | 155502..155852 (+) | 351 | WP_245108597.1 | aspartate 1-decarboxylase | - |
| MPG16_RS00715 (MPG16_00715) | - | 155863..156156 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG16_RS00720 (MPG16_00720) | - | 156156..157151 (+) | 996 | WP_245108911.1 | PDZ domain-containing protein | - |
| MPG16_RS00725 (MPG16_00725) | comB6 | 157157..158212 (+) | 1056 | WP_245108912.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG16_RS00730 (MPG16_00730) | comB7 | 158228..158353 (+) | 126 | WP_075668089.1 | comB7 lipoprotein | Machinery gene |
| MPG16_RS00735 (MPG16_00735) | comB8 | 158350..159093 (+) | 744 | WP_015429416.1 | virB8 family protein | Machinery gene |
| MPG16_RS00740 (MPG16_00740) | comB9 | 159093..160055 (+) | 963 | WP_245108598.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG16_RS00745 (MPG16_00745) | comB10 | 160048..161184 (+) | 1137 | WP_245108599.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG16_RS00750 (MPG16_00750) | - | 161254..162669 (+) | 1416 | WP_245108600.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG16_RS00755 (MPG16_00755) | gmd | 162680..163825 (+) | 1146 | WP_017283482.1 | GDP-mannose 4,6-dehydratase | - |
| MPG16_RS00760 (MPG16_00760) | - | 163818..164750 (+) | 933 | WP_245108601.1 | GDP-L-fucose synthase | - |
| MPG16_RS00765 (MPG16_00765) | hypE | 165022..166020 (-) | 999 | WP_245108602.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42245.85 Da Isoelectric Point: 9.8461
>NTDB_id=667531 MPG16_RS00745 WP_245108599.1 160048..161184(+) (comB10) [Helicobacter pylori strain Hpfe032]
MNKWIKGVLVFVGSFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGVLVFVGSFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSPPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667531 MPG16_RS00745 WP_245108599.1 160048..161184(+) (comB10) [Helicobacter pylori strain Hpfe032]
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGAGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAATCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAAGTTACCAATTTCTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCTAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGATTAAGGGGGTGCTTGTTTTTGTAGGGAGTTTTGCAACGATTACAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACTAATCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGAAGTTACCAATTTCTTTGGGGATTATCTTTTGTTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTAGTCAATCAAATTTTAAGAGATAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCTAATACTGACATTTTCTTTCCTATACCCAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |