Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | MPG16_RS00725 | Genome accession | NZ_CP094143 |
| Coordinates | 157157..158212 (+) | Length | 351 a.a. |
| NCBI ID | WP_245108912.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe032 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 152157..163212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG16_RS00695 (MPG16_00695) | - | 152582..152995 (+) | 414 | WP_001023005.1 | universal stress protein | - |
| MPG16_RS00700 (MPG16_00700) | - | 153015..153290 (+) | 276 | WP_000784960.1 | ATP-dependent Clp protease adaptor ClpS | - |
| MPG16_RS00705 (MPG16_00705) | - | 153290..155512 (+) | 2223 | WP_245108596.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| MPG16_RS00710 (MPG16_00710) | panD | 155502..155852 (+) | 351 | WP_245108597.1 | aspartate 1-decarboxylase | - |
| MPG16_RS00715 (MPG16_00715) | - | 155863..156156 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG16_RS00720 (MPG16_00720) | - | 156156..157151 (+) | 996 | WP_245108911.1 | PDZ domain-containing protein | - |
| MPG16_RS00725 (MPG16_00725) | comB6 | 157157..158212 (+) | 1056 | WP_245108912.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG16_RS00730 (MPG16_00730) | comB7 | 158228..158353 (+) | 126 | WP_075668089.1 | comB7 lipoprotein | Machinery gene |
| MPG16_RS00735 (MPG16_00735) | comB8 | 158350..159093 (+) | 744 | WP_015429416.1 | virB8 family protein | Machinery gene |
| MPG16_RS00740 (MPG16_00740) | comB9 | 159093..160055 (+) | 963 | WP_245108598.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG16_RS00745 (MPG16_00745) | comB10 | 160048..161184 (+) | 1137 | WP_245108599.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG16_RS00750 (MPG16_00750) | - | 161254..162669 (+) | 1416 | WP_245108600.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39949.90 Da Isoelectric Point: 8.8165
>NTDB_id=667527 MPG16_RS00725 WP_245108912.1 157157..158212(+) (comB6) [Helicobacter pylori strain Hpfe032]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPTSSSVSSSMRESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPTSSSVSSSMRESTSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=667527 MPG16_RS00725 WP_245108912.1 157157..158212(+) (comB6) [Helicobacter pylori strain Hpfe032]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCACTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGTCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCATGCACTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCATGCTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGTGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCACTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCACCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
97.436 |
100 |
0.974 |