Detailed information NTG0667530

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG16_RS00740
• Genome accession: NZ_CP094143
• Coordinates: 159093..160055 (+)
• Length: 320 a.a.
• NCBI ID: WP_245108598.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe032
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 154093..165055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG16_RS00710 (MPG16_00710)	panD	155502..155852 (+)	351	WP_245108597.1	aspartate 1-decarboxylase	-
MPG16_RS00715 (MPG16_00715)	-	155863..156156 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG16_RS00720 (MPG16_00720)	-	156156..157151 (+)	996	WP_245108911.1	PDZ domain-containing protein	-
MPG16_RS00725 (MPG16_00725)	comB6	157157..158212 (+)	1056	WP_245108912.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG16_RS00730 (MPG16_00730)	comB7	158228..158353 (+)	126	WP_075668089.1	comB7 lipoprotein	Machinery gene
MPG16_RS00735 (MPG16_00735)	comB8	158350..159093 (+)	744	WP_015429416.1	virB8 family protein	Machinery gene
MPG16_RS00740 (MPG16_00740)	comB9	159093..160055 (+)	963	WP_245108598.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG16_RS00745 (MPG16_00745)	comB10	160048..161184 (+)	1137	WP_245108599.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG16_RS00750 (MPG16_00750)	-	161254..162669 (+)	1416	WP_245108600.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG16_RS00755 (MPG16_00755)	gmd	162680..163825 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG16_RS00760 (MPG16_00760)	-	163818..164750 (+)	933	WP_245108601.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36741.27 Da
• Isoelectric Point: 9.4585

>NTDB_id=667530 MPG16_RS00740 WP_245108598.1 159093..160055(+) (comB9) [Helicobacter pylori strain Hpfe032]
MRKVLYALVGFLLVFSALKADDSLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKAPTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPEEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=667530 MPG16_RS00740 WP_245108598.1 159093..160055(+) (comB9) [Helicobacter pylori strain Hpfe032]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGATTCTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGGCTCCCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTTTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941