Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG16_RS00735 Genome accession   NZ_CP094143
Coordinates   158350..159093 (+) Length   247 a.a.
NCBI ID   WP_015429416.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe032     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153350..164093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG16_RS00710 (MPG16_00710) panD 155502..155852 (+) 351 WP_245108597.1 aspartate 1-decarboxylase -
  MPG16_RS00715 (MPG16_00715) - 155863..156156 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG16_RS00720 (MPG16_00720) - 156156..157151 (+) 996 WP_245108911.1 PDZ domain-containing protein -
  MPG16_RS00725 (MPG16_00725) comB6 157157..158212 (+) 1056 WP_245108912.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG16_RS00730 (MPG16_00730) comB7 158228..158353 (+) 126 WP_075668089.1 comB7 lipoprotein Machinery gene
  MPG16_RS00735 (MPG16_00735) comB8 158350..159093 (+) 744 WP_015429416.1 virB8 family protein Machinery gene
  MPG16_RS00740 (MPG16_00740) comB9 159093..160055 (+) 963 WP_245108598.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG16_RS00745 (MPG16_00745) comB10 160048..161184 (+) 1137 WP_245108599.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG16_RS00750 (MPG16_00750) - 161254..162669 (+) 1416 WP_245108600.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG16_RS00755 (MPG16_00755) gmd 162680..163825 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28643.86 Da        Isoelectric Point: 8.9546

>NTDB_id=667529 MPG16_RS00735 WP_015429416.1 158350..159093(+) (comB8) [Helicobacter pylori strain Hpfe032]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667529 MPG16_RS00735 WP_015429416.1 158350..159093(+) (comB8) [Helicobacter pylori strain Hpfe032]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment