Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG73_RS00760 | Genome accession | NZ_CP094122 |
| Coordinates | 153718..154854 (+) | Length | 378 a.a. |
| NCBI ID | WP_245057212.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe058 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 148718..159854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG73_RS00725 (MPG73_00725) | panD | 149170..149520 (+) | 351 | WP_245057207.1 | aspartate 1-decarboxylase | - |
| MPG73_RS00730 (MPG73_00730) | - | 149531..149824 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG73_RS00735 (MPG73_00735) | - | 149824..150819 (+) | 996 | WP_245057857.1 | PDZ domain-containing protein | - |
| MPG73_RS00740 (MPG73_00740) | comB6 | 150827..151882 (+) | 1056 | WP_245057209.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG73_RS00745 (MPG73_00745) | comB7 | 151898..152023 (+) | 126 | WP_001217874.1 | hypothetical protein | Machinery gene |
| MPG73_RS00750 (MPG73_00750) | comB8 | 152020..152763 (+) | 744 | WP_000660522.1 | virB8 family protein | Machinery gene |
| MPG73_RS00755 (MPG73_00755) | comB9 | 152763..153725 (+) | 963 | WP_245057211.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG73_RS00760 (MPG73_00760) | comB10 | 153718..154854 (+) | 1137 | WP_245057212.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG73_RS00765 (MPG73_00765) | - | 154924..156336 (+) | 1413 | WP_245057214.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG73_RS00770 (MPG73_00770) | gmd | 156351..157496 (+) | 1146 | WP_031214491.1 | GDP-mannose 4,6-dehydratase | - |
| MPG73_RS00775 (MPG73_00775) | - | 157489..158421 (+) | 933 | WP_245057216.1 | GDP-L-fucose synthase | - |
| MPG73_RS00780 (MPG73_00780) | hypE | 158670..159668 (-) | 999 | WP_245057218.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42045.57 Da Isoelectric Point: 9.9312
>NTDB_id=667170 MPG73_RS00760 WP_245057212.1 153718..154854(+) (comB10) [Helicobacter pylori strain Hpfe058]
MNKWLKGALVFVGGFATIITTSLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSSPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLANAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGALVFVGGFATIITTSLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSSPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLANAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=667170 MPG73_RS00760 WP_245057212.1 153718..154854(+) (comB10) [Helicobacter pylori strain Hpfe058]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAACTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCGCTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTAGGGGGTTTTGCAACGATTATAACAACTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCTACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCTTTTTTGATCACGCC
TATTTCTAGTCAGATCGCTGGTAAAGTCATCGCACAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCGCTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |