Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG73_RS00750 Genome accession   NZ_CP094122
Coordinates   152020..152763 (+) Length   247 a.a.
NCBI ID   WP_000660522.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe058     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 147020..157763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG73_RS00725 (MPG73_00725) panD 149170..149520 (+) 351 WP_245057207.1 aspartate 1-decarboxylase -
  MPG73_RS00730 (MPG73_00730) - 149531..149824 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG73_RS00735 (MPG73_00735) - 149824..150819 (+) 996 WP_245057857.1 PDZ domain-containing protein -
  MPG73_RS00740 (MPG73_00740) comB6 150827..151882 (+) 1056 WP_245057209.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG73_RS00745 (MPG73_00745) comB7 151898..152023 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPG73_RS00750 (MPG73_00750) comB8 152020..152763 (+) 744 WP_000660522.1 virB8 family protein Machinery gene
  MPG73_RS00755 (MPG73_00755) comB9 152763..153725 (+) 963 WP_245057211.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG73_RS00760 (MPG73_00760) comB10 153718..154854 (+) 1137 WP_245057212.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG73_RS00765 (MPG73_00765) - 154924..156336 (+) 1413 WP_245057214.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG73_RS00770 (MPG73_00770) gmd 156351..157496 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28698.94 Da        Isoelectric Point: 8.9546

>NTDB_id=667168 MPG73_RS00750 WP_000660522.1 152020..152763(+) (comB8) [Helicobacter pylori strain Hpfe058]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=667168 MPG73_RS00750 WP_000660522.1 152020..152763(+) (comB8) [Helicobacter pylori strain Hpfe058]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTCTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTAATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTTATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGACTTAATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment