Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPG65_RS00725 | Genome accession | NZ_CP094105 |
| Coordinates | 154962..156098 (+) | Length | 378 a.a. |
| NCBI ID | WP_245072240.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe076 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 149962..161098
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPG65_RS00690 (MPG65_00690) | panD | 150414..150764 (+) | 351 | WP_180446598.1 | aspartate 1-decarboxylase | - |
| MPG65_RS00695 (MPG65_00695) | - | 150775..151068 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPG65_RS00700 (MPG65_00700) | - | 151068..152063 (+) | 996 | WP_245072770.1 | PDZ domain-containing protein | - |
| MPG65_RS00705 (MPG65_00705) | comB6 | 152071..153126 (+) | 1056 | WP_154466563.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPG65_RS00710 (MPG65_00710) | comB7 | 153142..153267 (+) | 126 | WP_001217867.1 | hypothetical protein | Machinery gene |
| MPG65_RS00715 (MPG65_00715) | comB8 | 153264..154007 (+) | 744 | WP_245072236.1 | virB8 family protein | Machinery gene |
| MPG65_RS00720 (MPG65_00720) | comB9 | 154007..154969 (+) | 963 | WP_245072238.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPG65_RS00725 (MPG65_00725) | comB10 | 154962..156098 (+) | 1137 | WP_245072240.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPG65_RS00730 (MPG65_00730) | - | 156168..157580 (+) | 1413 | WP_245072241.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPG65_RS00735 (MPG65_00735) | gmd | 157595..158740 (+) | 1146 | WP_017283482.1 | GDP-mannose 4,6-dehydratase | - |
| MPG65_RS00740 (MPG65_00740) | - | 158733..159665 (+) | 933 | WP_001002433.1 | GDP-L-fucose synthase | - |
| MPG65_RS00745 (MPG65_00745) | hypE | 159917..160915 (-) | 999 | WP_245072242.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42059.64 Da Isoelectric Point: 9.8461
>NTDB_id=666894 MPG65_RS00725 WP_245072240.1 154962..156098(+) (comB10) [Helicobacter pylori strain Hpfe076]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSSPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFTSSPIDLKTNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKEDEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666894 MPG65_RS00725 WP_245072240.1 154962..156098(+) (comB10) [Helicobacter pylori strain Hpfe076]
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATTACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
ATGAATAAGTGGATTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTACTAGCTCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATTACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGAATCGATGGTTTTACTAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGGATGAAGTCATCG
CTGAGTTTTTGAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.974 |
100 |
0.95 |