Detailed information NTG0666890

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG65_RS00705
• Genome accession: NZ_CP094105
• Coordinates: 152071..153126 (+)
• Length: 351 a.a.
• NCBI ID: WP_154466563.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe076
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 147071..158126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG65_RS00675 (MPG65_00675)	-	147494..147907 (+)	414	WP_001023005.1	universal stress protein	-
MPG65_RS00680 (MPG65_00680)	-	147927..148202 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG65_RS00685 (MPG65_00685)	-	148202..150424 (+)	2223	WP_245072235.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG65_RS00690 (MPG65_00690)	panD	150414..150764 (+)	351	WP_180446598.1	aspartate 1-decarboxylase	-
MPG65_RS00695 (MPG65_00695)	-	150775..151068 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG65_RS00700 (MPG65_00700)	-	151068..152063 (+)	996	WP_245072770.1	PDZ domain-containing protein	-
MPG65_RS00705 (MPG65_00705)	comB6	152071..153126 (+)	1056	WP_154466563.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG65_RS00710 (MPG65_00710)	comB7	153142..153267 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG65_RS00715 (MPG65_00715)	comB8	153264..154007 (+)	744	WP_245072236.1	virB8 family protein	Machinery gene
MPG65_RS00720 (MPG65_00720)	comB9	154007..154969 (+)	963	WP_245072238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG65_RS00725 (MPG65_00725)	comB10	154962..156098 (+)	1137	WP_245072240.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG65_RS00730 (MPG65_00730)	-	156168..157580 (+)	1413	WP_245072241.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39841.80 Da
• Isoelectric Point: 8.8165

>NTDB_id=666890 MPG65_RS00705 WP_154466563.1 152071..153126(+) (comB6) [Helicobacter pylori strain Hpfe076]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666890 MPG65_RS00705 WP_154466563.1 152071..153126(+) (comB6) [Helicobacter pylori strain Hpfe076]
ATGAAAAATGACGCTTATGAAATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCCAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGAAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98