Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG65_RS00715 Genome accession   NZ_CP094105
Coordinates   153264..154007 (+) Length   247 a.a.
NCBI ID   WP_245072236.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe076     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 148264..159007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG65_RS00690 (MPG65_00690) panD 150414..150764 (+) 351 WP_180446598.1 aspartate 1-decarboxylase -
  MPG65_RS00695 (MPG65_00695) - 150775..151068 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPG65_RS00700 (MPG65_00700) - 151068..152063 (+) 996 WP_245072770.1 PDZ domain-containing protein -
  MPG65_RS00705 (MPG65_00705) comB6 152071..153126 (+) 1056 WP_154466563.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG65_RS00710 (MPG65_00710) comB7 153142..153267 (+) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG65_RS00715 (MPG65_00715) comB8 153264..154007 (+) 744 WP_245072236.1 virB8 family protein Machinery gene
  MPG65_RS00720 (MPG65_00720) comB9 154007..154969 (+) 963 WP_245072238.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG65_RS00725 (MPG65_00725) comB10 154962..156098 (+) 1137 WP_245072240.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG65_RS00730 (MPG65_00730) - 156168..157580 (+) 1413 WP_245072241.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG65_RS00735 (MPG65_00735) gmd 157595..158740 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28686.88 Da        Isoelectric Point: 8.9546

>NTDB_id=666892 MPG65_RS00715 WP_245072236.1 153264..154007(+) (comB8) [Helicobacter pylori strain Hpfe076]
MKEKPFNSEQLNYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666892 MPG65_RS00715 WP_245072236.1 153264..154007(+) (comB8) [Helicobacter pylori strain Hpfe076]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGAACTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
TTCTATTGCAGCTAAACTCATGAATGAAAACAAGTTGGTATATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATT
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976