Detailed information NTG0666893

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG65_RS00720
• Genome accession: NZ_CP094105
• Coordinates: 154007..154969 (+)
• Length: 320 a.a.
• NCBI ID: WP_245072238.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe076
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 149007..159969

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG65_RS00690 (MPG65_00690)	panD	150414..150764 (+)	351	WP_180446598.1	aspartate 1-decarboxylase	-
MPG65_RS00695 (MPG65_00695)	-	150775..151068 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPG65_RS00700 (MPG65_00700)	-	151068..152063 (+)	996	WP_245072770.1	PDZ domain-containing protein	-
MPG65_RS00705 (MPG65_00705)	comB6	152071..153126 (+)	1056	WP_154466563.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG65_RS00710 (MPG65_00710)	comB7	153142..153267 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG65_RS00715 (MPG65_00715)	comB8	153264..154007 (+)	744	WP_245072236.1	virB8 family protein	Machinery gene
MPG65_RS00720 (MPG65_00720)	comB9	154007..154969 (+)	963	WP_245072238.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG65_RS00725 (MPG65_00725)	comB10	154962..156098 (+)	1137	WP_245072240.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG65_RS00730 (MPG65_00730)	-	156168..157580 (+)	1413	WP_245072241.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG65_RS00735 (MPG65_00735)	gmd	157595..158740 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG65_RS00740 (MPG65_00740)	-	158733..159665 (+)	933	WP_001002433.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 320 a.a.
• Molecular weight: 36894.54 Da
• Isoelectric Point: 9.6404

>NTDB_id=666893 MPG65_RS00720 WP_245072238.1 154007..154969(+) (comB9) [Helicobacter pylori strain Hpfe076]
MRKVLYALVGFLLVFSALKSDDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTFEKALTNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKSK
LSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKDE

Nucleotide

• Length: 963 bp

>NTDB_id=666893 MPG65_RS00720 WP_245072238.1 154007..154969(+) (comB9) [Helicobacter pylori strain Hpfe076]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTTTAGCGCTTTAAAATCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCA
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAATGATCGCATTTTGCTTATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCTTTGAAAAGGCCCTCACAAACAACAAACCCTTAAA
AGAAGAAAAAGAAGAAACTAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAAAAG
ACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCCAAA
CTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTCTAA
ATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTAGGCGATTACATTATCGCTG
AAGATGTCTCGGCTAAATGGACTTTAAGATTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGATGAA
TAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.331	100	0.941