Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPF96_RS00725 | Genome accession | NZ_CP094101 |
| Coordinates | 151350..152486 (+) | Length | 378 a.a. |
| NCBI ID | WP_245049205.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe079 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 146350..157486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF96_RS00690 (MPF96_00690) | panD | 146811..147161 (+) | 351 | WP_154548548.1 | aspartate 1-decarboxylase | - |
| MPF96_RS00695 (MPF96_00695) | - | 147172..147465 (+) | 294 | WP_000347917.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF96_RS00700 (MPF96_00700) | - | 147465..148460 (+) | 996 | WP_245049851.1 | PDZ domain-containing protein | - |
| MPF96_RS00705 (MPF96_00705) | comB6 | 148468..149523 (+) | 1056 | WP_245049853.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF96_RS00710 (MPF96_00710) | comB7 | 149539..149652 (+) | 114 | WP_073422943.1 | comB7 lipoprotein | Machinery gene |
| MPF96_RS00715 (MPF96_00715) | comB8 | 149649..150392 (+) | 744 | WP_000660545.1 | virB8 family protein | Machinery gene |
| MPF96_RS00720 (MPF96_00720) | comB9 | 150392..151357 (+) | 966 | WP_245049203.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF96_RS00725 (MPF96_00725) | comB10 | 151350..152486 (+) | 1137 | WP_245049205.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF96_RS00730 (MPF96_00730) | - | 152557..153969 (+) | 1413 | WP_245049207.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPF96_RS00735 (MPF96_00735) | gmd | 153983..155128 (+) | 1146 | WP_031214491.1 | GDP-mannose 4,6-dehydratase | - |
| MPF96_RS00740 (MPF96_00740) | - | 155121..156053 (+) | 933 | WP_245049209.1 | GDP-L-fucose synthase | - |
| MPF96_RS00745 (MPF96_00745) | hypE | 156302..157300 (-) | 999 | WP_245049211.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 41984.65 Da Isoelectric Point: 9.9227
>NTDB_id=666855 MPF96_RS00725 WP_245049205.1 151350..152486(+) (comB10) [Helicobacter pylori strain Hpfe079]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTPTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFASPPIDLKANTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666855 MPF96_RS00725 WP_245049205.1 151350..152486(+) (comB10) [Helicobacter pylori strain Hpfe079]
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCTCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACAAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATTG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGCTTGTTTTTGTGGGGGGTTTTGCAACGATTATAACAATTTCTTTAATCTATCACCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTCCCACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCTCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTGCTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTTAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACAAACCTTAAAGAA
AAAGACATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTCATTG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
95.503 |
100 |
0.955 |