Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF96_RS00715 Genome accession   NZ_CP094101
Coordinates   149649..150392 (+) Length   247 a.a.
NCBI ID   WP_000660545.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe079     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144649..155392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF96_RS00690 (MPF96_00690) panD 146811..147161 (+) 351 WP_154548548.1 aspartate 1-decarboxylase -
  MPF96_RS00695 (MPF96_00695) - 147172..147465 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPF96_RS00700 (MPF96_00700) - 147465..148460 (+) 996 WP_245049851.1 PDZ domain-containing protein -
  MPF96_RS00705 (MPF96_00705) comB6 148468..149523 (+) 1056 WP_245049853.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF96_RS00710 (MPF96_00710) comB7 149539..149652 (+) 114 WP_073422943.1 comB7 lipoprotein Machinery gene
  MPF96_RS00715 (MPF96_00715) comB8 149649..150392 (+) 744 WP_000660545.1 virB8 family protein Machinery gene
  MPF96_RS00720 (MPF96_00720) comB9 150392..151357 (+) 966 WP_245049203.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF96_RS00725 (MPF96_00725) comB10 151350..152486 (+) 1137 WP_245049205.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF96_RS00730 (MPF96_00730) - 152557..153969 (+) 1413 WP_245049207.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF96_RS00735 (MPF96_00735) gmd 153983..155128 (+) 1146 WP_031214491.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28657.89 Da        Isoelectric Point: 8.9546

>NTDB_id=666853 MPF96_RS00715 WP_000660545.1 149649..150392(+) (comB8) [Helicobacter pylori strain Hpfe079]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVSDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666853 MPF96_RS00715 WP_000660545.1 149649..150392(+) (comB8) [Helicobacter pylori strain Hpfe079]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAGTGATTTGGACATGCAAAGCGTGTTCAGACTGGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTGTTAATCAGTGTTTTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCAAGCGT
TTCTATTGCGGCTAAACTCATGAATGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976