Detailed information NTG0666851

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPF96_RS00705
• Genome accession: NZ_CP094101
• Coordinates: 148468..149523 (+)
• Length: 351 a.a.
• NCBI ID: WP_245049853.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe079
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 143468..154523

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF96_RS00675 (MPF96_00675)	-	143891..144304 (+)	414	WP_001023005.1	universal stress protein	-
MPF96_RS00680 (MPF96_00680)	-	144324..144599 (+)	276	WP_245049198.1	ATP-dependent Clp protease adaptor ClpS	-
MPF96_RS00685 (MPF96_00685)	-	144599..146821 (+)	2223	WP_245049200.1	ATP-dependent Clp protease ATP-binding subunit	-
MPF96_RS00690 (MPF96_00690)	panD	146811..147161 (+)	351	WP_154548548.1	aspartate 1-decarboxylase	-
MPF96_RS00695 (MPF96_00695)	-	147172..147465 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPF96_RS00700 (MPF96_00700)	-	147465..148460 (+)	996	WP_245049851.1	PDZ domain-containing protein	-
MPF96_RS00705 (MPF96_00705)	comB6	148468..149523 (+)	1056	WP_245049853.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF96_RS00710 (MPF96_00710)	comB7	149539..149652 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPF96_RS00715 (MPF96_00715)	comB8	149649..150392 (+)	744	WP_000660545.1	virB8 family protein	Machinery gene
MPF96_RS00720 (MPF96_00720)	comB9	150392..151357 (+)	966	WP_245049203.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF96_RS00725 (MPF96_00725)	comB10	151350..152486 (+)	1137	WP_245049205.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF96_RS00730 (MPF96_00730)	-	152557..153969 (+)	1413	WP_245049207.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39875.81 Da
• Isoelectric Point: 8.8165

>NTDB_id=666851 MPF96_RS00705 WP_245049853.1 148468..149523(+) (comB6) [Helicobacter pylori strain Hpfe079]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCIFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPSASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666851 MPF96_RS00705 WP_245049853.1 148468..149523(+) (comB6) [Helicobacter pylori strain Hpfe079]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCGCACAAAGCCT
CTCTCAAAGCTTGAGCAATTTTTCTAATCATGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCATTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCACTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCATCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACCCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972