Detailed information NTG0666854

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF96_RS00720
• Genome accession: NZ_CP094101
• Coordinates: 150392..151357 (+)
• Length: 321 a.a.
• NCBI ID: WP_245049203.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe079
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145392..156357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF96_RS00690 (MPF96_00690)	panD	146811..147161 (+)	351	WP_154548548.1	aspartate 1-decarboxylase	-
MPF96_RS00695 (MPF96_00695)	-	147172..147465 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
MPF96_RS00700 (MPF96_00700)	-	147465..148460 (+)	996	WP_245049851.1	PDZ domain-containing protein	-
MPF96_RS00705 (MPF96_00705)	comB6	148468..149523 (+)	1056	WP_245049853.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF96_RS00710 (MPF96_00710)	comB7	149539..149652 (+)	114	WP_073422943.1	comB7 lipoprotein	Machinery gene
MPF96_RS00715 (MPF96_00715)	comB8	149649..150392 (+)	744	WP_000660545.1	virB8 family protein	Machinery gene
MPF96_RS00720 (MPF96_00720)	comB9	150392..151357 (+)	966	WP_245049203.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF96_RS00725 (MPF96_00725)	comB10	151350..152486 (+)	1137	WP_245049205.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF96_RS00730 (MPF96_00730)	-	152557..153969 (+)	1413	WP_245049207.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF96_RS00735 (MPF96_00735)	gmd	153983..155128 (+)	1146	WP_031214491.1	GDP-mannose 4,6-dehydratase	-
MPF96_RS00740 (MPF96_00740)	-	155121..156053 (+)	933	WP_245049209.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36856.42 Da
• Isoelectric Point: 9.3756

>NTDB_id=666854 MPF96_RS00720 WP_245049203.1 150392..151357(+) (comB9) [Helicobacter pylori strain Hpfe079]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLEKTPTNNSKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666854 MPF96_RS00720 WP_245049203.1 150392..151357(+) (comB9) [Helicobacter pylori strain Hpfe079]
ATGCGTAAGGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAAACAAAGAAAATACCCTTGAAAAGACCCCCACAAACAACAGCAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACCTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.437	100	0.931