Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OH827_RS09980 Genome accession   NZ_CP108779
Coordinates   2293384..2295117 (+) Length   577 a.a.
NCBI ID   WP_093708928.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00891     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2288384..2300117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH827_RS09945 (OH827_09935) - 2289417..2290190 (+) 774 WP_330452198.1 ABC transporter ATP-binding protein -
  OH827_RS09950 (OH827_09940) - 2290187..2290678 (+) 492 WP_330452199.1 S24/S26 family peptidase -
  OH827_RS09970 (OH827_09960) - 2291428..2291733 (+) 306 WP_018518286.1 hypothetical protein -
  OH827_RS09975 (OH827_09965) - 2291803..2293248 (+) 1446 WP_330452200.1 FGGY family carbohydrate kinase -
  OH827_RS09980 (OH827_09970) rcrP 2293384..2295117 (+) 1734 WP_093708928.1 ABC transporter ATP-binding protein Regulator
  OH827_RS09985 (OH827_09975) - 2295117..2297048 (+) 1932 WP_330452201.1 ABC transporter ATP-binding protein -
  OH827_RS09990 (OH827_09980) rpoS 2297094..2298137 (-) 1044 WP_330452202.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62693.73 Da        Isoelectric Point: 5.2547

>NTDB_id=666374 OH827_RS09980 WP_093708928.1 2293384..2295117(+) (rcrP) [Streptomyces sp. NBC_00891]
MLIKILRAYLGPYKKPIAVLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYILQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSSREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVAVSLIVRKMRPLFRQMQKRLDTVNRVLREQITGNRVIRAFVRDDYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLETESSVVP
PVEPVRELRAHGHLEVRGADFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=666374 OH827_RS09980 WP_093708928.1 2293384..2295117(+) (rcrP) [Streptomyces sp. NBC_00891]
GTGCTCATAAAAATTCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGGTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACCCTCTACCTGCCGACCCTCAACGCCGACATCATCGACAACGGTGTCGTCCAGGGGGACACGGGCTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGTGCC
CGTACCGCCTCCGCGCTCGGGCGGGACGTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGCGAGGTCGG
GCGGTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATACAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTGCCGCTCTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGGGTCGCGGTCAGCCTGATCGTGCGGAAGATGCGCCCGCTGTTCCGGCAGATGCA
GAAGCGGCTCGACACGGTCAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGCGACG
ACTACGAGGAGGGGCGCTTCCGGGGCGCCAACACCGAACTGACGGACGTGGCGCTGTCGACGGGCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGCATGGAGATCGGCGCGCTGACGGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCGGAGCGCGTCCAGGAGGTCCTGGAGACCGAGTCCAGCGTCGTCCCG
CCGGTGGAACCGGTGCGGGAGCTGCGCGCCCACGGGCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGACCTGGTGGCGCGGCCGGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTACCCCGGCTGTTCGACGTGACGGACGGCCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACCCTGGACCCGGTGCTGCTGGCCAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCCCAGGCGAAGGAGTTCG
TCGAGGCCCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGGCTG
TCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACGGA
CGCGGCGCTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GGGAGGCCGACCGGATCATCGTGCTGGACGAGGGGCGGGTCGTCGGGACCGGCACCCATCACGAACTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383