Detailed information NTG0666373

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPG11_RS00740
• Genome accession: NZ_CP094067
• Coordinates: 150718..151683 (+)
• Length: 321 a.a.
• NCBI ID: WP_245052685.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe108
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 145718..156683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG11_RS00710 (MPG11_00710)	panD	147125..147475 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG11_RS00715 (MPG11_00715)	-	147486..147779 (+)	294	WP_050835701.1	YbaB/EbfC family nucleoid-associated protein	-
MPG11_RS00720 (MPG11_00720)	-	147779..148774 (+)	996	WP_245049992.1	PDZ domain-containing protein	-
MPG11_RS00725 (MPG11_00725)	comB6	148782..149837 (+)	1056	WP_245049440.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG11_RS00730 (MPG11_00730)	comB7	149853..149978 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG11_RS00735 (MPG11_00735)	comB8	149975..150718 (+)	744	WP_060760673.1	virB8 family protein	Machinery gene
MPG11_RS00740 (MPG11_00740)	comB9	150718..151683 (+)	966	WP_245052685.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG11_RS00745 (MPG11_00745)	comB10	151676..152812 (+)	1137	WP_245052687.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG11_RS00750 (MPG11_00750)	-	152882..154294 (+)	1413	WP_245052689.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPG11_RS00755 (MPG11_00755)	gmd	154308..155453 (+)	1146	WP_017283482.1	GDP-mannose 4,6-dehydratase	-
MPG11_RS00760 (MPG11_00760)	-	155446..156378 (+)	933	WP_245052691.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36841.39 Da
• Isoelectric Point: 9.5584

>NTDB_id=666373 MPG11_RS00740 WP_245052685.1 150718..151683(+) (comB9) [Helicobacter pylori strain Hpfe108]
MRKVLYALVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKVFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQIQENTLEKAPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPKEIFNDKQFTYFKFDKKLALSKFPVVYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRSGKDYLCIRFIKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666373 MPG11_RS00740 WP_245052685.1 150718..151683(+) (comB9) [Helicobacter pylori strain Hpfe108]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGTTTCTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGG
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCCAACGCTTTTATGAAGCCGCAAATTCAAGAAAATACCCTTGAAAAGGCCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTAAAGAAATTTTCAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGGTTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACTAGGATTGTAGGCGATTACATTATCG
CTGAAGATGTGTCGGCTAAATGGACTTTAAGATCGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	91.104	100	0.925