Detailed information NTG0666370

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG11_RS00725
• Genome accession: NZ_CP094067
• Coordinates: 148782..149837 (+)
• Length: 351 a.a.
• NCBI ID: WP_245049440.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe108
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 143782..154837

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG11_RS00695 (MPG11_00695)	-	144205..144618 (+)	414	WP_001023005.1	universal stress protein	-
MPG11_RS00700 (MPG11_00700)	-	144638..144913 (+)	276	WP_245052681.1	ATP-dependent Clp protease adaptor ClpS	-
MPG11_RS00705 (MPG11_00705)	-	144913..147135 (+)	2223	WP_245052683.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG11_RS00710 (MPG11_00710)	panD	147125..147475 (+)	351	WP_000142212.1	aspartate 1-decarboxylase	-
MPG11_RS00715 (MPG11_00715)	-	147486..147779 (+)	294	WP_050835701.1	YbaB/EbfC family nucleoid-associated protein	-
MPG11_RS00720 (MPG11_00720)	-	147779..148774 (+)	996	WP_245049992.1	PDZ domain-containing protein	-
MPG11_RS00725 (MPG11_00725)	comB6	148782..149837 (+)	1056	WP_245049440.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG11_RS00730 (MPG11_00730)	comB7	149853..149978 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG11_RS00735 (MPG11_00735)	comB8	149975..150718 (+)	744	WP_060760673.1	virB8 family protein	Machinery gene
MPG11_RS00740 (MPG11_00740)	comB9	150718..151683 (+)	966	WP_245052685.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG11_RS00745 (MPG11_00745)	comB10	151676..152812 (+)	1137	WP_245052687.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG11_RS00750 (MPG11_00750)	-	152882..154294 (+)	1413	WP_245052689.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39866.88 Da
• Isoelectric Point: 9.0412

>NTDB_id=666370 MPG11_RS00725 WP_245049440.1 148782..149837(+) (comB6) [Helicobacter pylori strain Hpfe108]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSTRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666370 MPG11_RS00725 WP_245049440.1 148782..149837(+) (comB6) [Helicobacter pylori strain Hpfe108]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGTGTTAGCGCACTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGCTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGTGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96