Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPG11_RS00735 Genome accession   NZ_CP094067
Coordinates   149975..150718 (+) Length   247 a.a.
NCBI ID   WP_060760673.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe108     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144975..155718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG11_RS00710 (MPG11_00710) panD 147125..147475 (+) 351 WP_000142212.1 aspartate 1-decarboxylase -
  MPG11_RS00715 (MPG11_00715) - 147486..147779 (+) 294 WP_050835701.1 YbaB/EbfC family nucleoid-associated protein -
  MPG11_RS00720 (MPG11_00720) - 147779..148774 (+) 996 WP_245049992.1 PDZ domain-containing protein -
  MPG11_RS00725 (MPG11_00725) comB6 148782..149837 (+) 1056 WP_245049440.1 P-type conjugative transfer protein TrbL Machinery gene
  MPG11_RS00730 (MPG11_00730) comB7 149853..149978 (+) 126 WP_001217867.1 hypothetical protein Machinery gene
  MPG11_RS00735 (MPG11_00735) comB8 149975..150718 (+) 744 WP_060760673.1 virB8 family protein Machinery gene
  MPG11_RS00740 (MPG11_00740) comB9 150718..151683 (+) 966 WP_245052685.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPG11_RS00745 (MPG11_00745) comB10 151676..152812 (+) 1137 WP_245052687.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPG11_RS00750 (MPG11_00750) - 152882..154294 (+) 1413 WP_245052689.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPG11_RS00755 (MPG11_00755) gmd 154308..155453 (+) 1146 WP_017283482.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28712.97 Da        Isoelectric Point: 8.9546

>NTDB_id=666372 MPG11_RS00735 WP_060760673.1 149975..150718(+) (comB8) [Helicobacter pylori strain Hpfe108]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIVAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666372 MPG11_RS00735 WP_060760673.1 149975..150718(+) (comB8) [Helicobacter pylori strain Hpfe108]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGGGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAATCCCATTGCGAGCGT
TTCTATTGTGGCTAAACTCATGAACGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968