Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | MPF87_RS00805 | Genome accession | NZ_CP094052 |
| Coordinates | 169234..170370 (+) | Length | 378 a.a. |
| NCBI ID | WP_245012729.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain Hpfe126 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 164234..175370
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MPF87_RS00770 (MPF87_00770) | panD | 164688..165041 (+) | 354 | WP_245012727.1 | aspartate 1-decarboxylase | - |
| MPF87_RS00775 (MPF87_00775) | - | 165044..165337 (+) | 294 | WP_048944407.1 | YbaB/EbfC family nucleoid-associated protein | - |
| MPF87_RS00780 (MPF87_00780) | - | 165337..166332 (+) | 996 | WP_245013052.1 | PDZ domain-containing protein | - |
| MPF87_RS00785 (MPF87_00785) | comB6 | 166340..167395 (+) | 1056 | WP_245013053.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| MPF87_RS00790 (MPF87_00790) | comB7 | 167411..167536 (+) | 126 | WP_001217865.1 | hypothetical protein | Machinery gene |
| MPF87_RS00795 (MPF87_00795) | comB8 | 167533..168276 (+) | 744 | WP_000660533.1 | virB8 family protein | Machinery gene |
| MPF87_RS00800 (MPF87_00800) | comB9 | 168276..169241 (+) | 966 | WP_245012728.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| MPF87_RS00805 (MPF87_00805) | comB10 | 169234..170370 (+) | 1137 | WP_245012729.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| MPF87_RS00810 (MPF87_00810) | - | 170440..171852 (+) | 1413 | WP_245012730.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| MPF87_RS00815 (MPF87_00815) | gmd | 171866..173011 (+) | 1146 | WP_001918970.1 | GDP-mannose 4,6-dehydratase | - |
| MPF87_RS00820 (MPF87_00820) | - | 173004..173936 (+) | 933 | WP_245012731.1 | GDP-L-fucose synthase | - |
| MPF87_RS00825 (MPF87_00825) | hypE | 174205..175203 (-) | 999 | WP_245012732.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42283.95 Da Isoelectric Point: 9.9924
>NTDB_id=666135 MPF87_RS00805 WP_245012729.1 169234..170370(+) (comB10) [Helicobacter pylori strain Hpfe126]
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDDVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKIPPIDLKTNTTPPKKDFSLRQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNSLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
MNKWIKGALVFVGGFATIVTISLIYHQKPKAPLNNQPNLLNDDDVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKIPPIDLKTNTTPPKKDFSLRQWDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNSLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK
Nucleotide
Download Length: 1137 bp
>NTDB_id=666135 MPF87_RS00805 WP_245012729.1 169234..170370(+) (comB10) [Helicobacter pylori strain Hpfe126]
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTACCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGATGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGATCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAGGCAATGGGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAATCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACAGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA
ATGAATAAGTGGATTAAGGGGGCACTTGTTTTTGTGGGGGGTTTTGCAACGATTGTAACAATTTCTTTAATCTACCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGATGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGATCCCTCCCATAGATTTAAAAAC
AAACACAACCCCCCCTAAAAAAGATTTTTCTCTAAGGCAATGGGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAATCCTAAAGGAATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCTGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTTTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGAGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACAGCTTATTGATTG
GGATCACTTCGGCCTTAAACAACAGGGGCAATAAAGAAGGAGTCACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAAAGAGAATGAAGTTATCG
CTGAGTTTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
94.444 |
100 |
0.944 |