Detailed information NTG0666131

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPF87_RS00785
• Genome accession: NZ_CP094052
• Coordinates: 166340..167395 (+)
• Length: 351 a.a.
• NCBI ID: WP_245013053.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe126
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 161340..172395

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF87_RS00755 (MPF87_00755)	-	161767..162180 (+)	414	WP_245012724.1	universal stress protein	-
MPF87_RS00760 (MPF87_00760)	-	162201..162476 (+)	276	WP_245012725.1	ATP-dependent Clp protease adaptor ClpS	-
MPF87_RS00765 (MPF87_00765)	-	162476..164698 (+)	2223	WP_245012726.1	ATP-dependent Clp protease ATP-binding subunit	-
MPF87_RS00770 (MPF87_00770)	panD	164688..165041 (+)	354	WP_245012727.1	aspartate 1-decarboxylase	-
MPF87_RS00775 (MPF87_00775)	-	165044..165337 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
MPF87_RS00780 (MPF87_00780)	-	165337..166332 (+)	996	WP_245013052.1	PDZ domain-containing protein	-
MPF87_RS00785 (MPF87_00785)	comB6	166340..167395 (+)	1056	WP_245013053.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF87_RS00790 (MPF87_00790)	comB7	167411..167536 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
MPF87_RS00795 (MPF87_00795)	comB8	167533..168276 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPF87_RS00800 (MPF87_00800)	comB9	168276..169241 (+)	966	WP_245012728.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF87_RS00805 (MPF87_00805)	comB10	169234..170370 (+)	1137	WP_245012729.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF87_RS00810 (MPF87_00810)	-	170440..171852 (+)	1413	WP_245012730.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39861.86 Da
• Isoelectric Point: 8.8165

>NTDB_id=666131 MPF87_RS00785 WP_245013053.1 166340..167395(+) (comB6) [Helicobacter pylori strain Hpfe126]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSPISTSIRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666131 MPF87_RS00785 WP_245013053.1 166340..167395(+) (comB6) [Helicobacter pylori strain Hpfe126]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTTACGGCAATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCCAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGATGCGCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTCCTATTTCTACTTCTATAAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.866	100	0.969