Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF87_RS00795 Genome accession   NZ_CP094052
Coordinates   167533..168276 (+) Length   247 a.a.
NCBI ID   WP_000660533.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe126     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 162533..173276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF87_RS00770 (MPF87_00770) panD 164688..165041 (+) 354 WP_245012727.1 aspartate 1-decarboxylase -
  MPF87_RS00775 (MPF87_00775) - 165044..165337 (+) 294 WP_048944407.1 YbaB/EbfC family nucleoid-associated protein -
  MPF87_RS00780 (MPF87_00780) - 165337..166332 (+) 996 WP_245013052.1 PDZ domain-containing protein -
  MPF87_RS00785 (MPF87_00785) comB6 166340..167395 (+) 1056 WP_245013053.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF87_RS00790 (MPF87_00790) comB7 167411..167536 (+) 126 WP_001217865.1 hypothetical protein Machinery gene
  MPF87_RS00795 (MPF87_00795) comB8 167533..168276 (+) 744 WP_000660533.1 virB8 family protein Machinery gene
  MPF87_RS00800 (MPF87_00800) comB9 168276..169241 (+) 966 WP_245012728.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF87_RS00805 (MPF87_00805) comB10 169234..170370 (+) 1137 WP_245012729.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF87_RS00810 (MPF87_00810) - 170440..171852 (+) 1413 WP_245012730.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF87_RS00815 (MPF87_00815) gmd 171866..173011 (+) 1146 WP_001918970.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28670.89 Da        Isoelectric Point: 8.9546

>NTDB_id=666133 MPF87_RS00795 WP_000660533.1 167533..168276(+) (comB8) [Helicobacter pylori strain Hpfe126]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666133 MPF87_RS00795 WP_000660533.1 167533..168276(+) (comB8) [Helicobacter pylori strain Hpfe126]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCACCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.968