Detailed information NTG0666134

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: MPF87_RS00800
• Genome accession: NZ_CP094052
• Coordinates: 168276..169241 (+)
• Length: 321 a.a.
• NCBI ID: WP_245012728.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe126
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 163276..174241

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPF87_RS00770 (MPF87_00770)	panD	164688..165041 (+)	354	WP_245012727.1	aspartate 1-decarboxylase	-
MPF87_RS00775 (MPF87_00775)	-	165044..165337 (+)	294	WP_048944407.1	YbaB/EbfC family nucleoid-associated protein	-
MPF87_RS00780 (MPF87_00780)	-	165337..166332 (+)	996	WP_245013052.1	PDZ domain-containing protein	-
MPF87_RS00785 (MPF87_00785)	comB6	166340..167395 (+)	1056	WP_245013053.1	P-type conjugative transfer protein TrbL	Machinery gene
MPF87_RS00790 (MPF87_00790)	comB7	167411..167536 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
MPF87_RS00795 (MPF87_00795)	comB8	167533..168276 (+)	744	WP_000660533.1	virB8 family protein	Machinery gene
MPF87_RS00800 (MPF87_00800)	comB9	168276..169241 (+)	966	WP_245012728.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPF87_RS00805 (MPF87_00805)	comB10	169234..170370 (+)	1137	WP_245012729.1	DNA type IV secretion system protein ComB10	Machinery gene
MPF87_RS00810 (MPF87_00810)	-	170440..171852 (+)	1413	WP_245012730.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
MPF87_RS00815 (MPF87_00815)	gmd	171866..173011 (+)	1146	WP_001918970.1	GDP-mannose 4,6-dehydratase	-
MPF87_RS00820 (MPF87_00820)	-	173004..173936 (+)	933	WP_245012731.1	GDP-L-fucose synthase	-

Sequence

Protein

• Length: 321 a.a.
• Molecular weight: 36869.38 Da
• Isoelectric Point: 9.2454

>NTDB_id=666134 MPF87_RS00800 WP_245012728.1 168276..169241(+) (comB9) [Helicobacter pylori strain Hpfe126]
MRKVLCTLVGFLLVSSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNVDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKGKD
E

Nucleotide

• Length: 966 bp

>NTDB_id=666134 MPF87_RS00800 WP_245012728.1 168276..169241(+) (comB9) [Helicobacter pylori strain Hpfe126]
ATGCGTAAAGTTTTATGCACTCTTGTGGGCTTTTTGTTGGTTTCTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAATGTTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGTTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACCATTGGCGATAACACTAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTGTCGGCTAAATGGACTTTAAGATTAGGTAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.355	100	0.941