Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   MO978_RS08680 Genome accession   NZ_CP093959
Coordinates   1753305..1754294 (-) Length   329 a.a.
NCBI ID   WP_289421731.1    Uniprot ID   -
Organism   Lactococcus lactis strain FAM 17919     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1748305..1759294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MO978_RS08665 (MO978_08660) - 1749671..1750597 (-) 927 WP_010906107.1 peptidyl-prolyl cis-trans isomerase -
  MO978_RS08670 (MO978_08665) - 1750751..1751434 (-) 684 WP_010906108.1 O-methyltransferase -
  MO978_RS08675 (MO978_08670) pepF 1751437..1753242 (-) 1806 WP_003132689.1 oligoendopeptidase F Regulator
  MO978_RS08680 (MO978_08675) coiA 1753305..1754294 (-) 990 WP_289421731.1 competence protein CoiA Machinery gene
  MO978_RS08685 (MO978_08680) - 1754368..1755453 (-) 1086 WP_289421732.1 YdcF family protein -
  MO978_RS08690 (MO978_08685) - 1755615..1756439 (-) 825 WP_289421733.1 alpha/beta hydrolase -
  MO978_RS08695 (MO978_08690) - 1756654..1758075 (-) 1422 WP_289421734.1 NCS2 family permease -
  MO978_RS08700 (MO978_08695) - 1758382..1759218 (+) 837 WP_003130402.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 39367.88 Da        Isoelectric Point: 8.2900

>NTDB_id=665942 MO978_RS08680 WP_289421731.1 1753305..1754294(-) (coiA) [Lactococcus lactis strain FAM 17919]
MLTAIDENGQVVNLLEIEVKELTGKYFCPSCKSELFIKNGEIKMPHFAHKSLKACDLWLENESEQHLGLKKALYQWFKKT
DKVEIEAYIPEFKQRPDLLVNDTIAIEIQCSHLSMKRLKERTENYQVHGFTVLWLMGENLWLKDQITNLQKNLVYFSENR
GFYYWELDFKTQKLRLKTLIHEDLSGKIIYLQEEIPFGQGRLIEQLRLPFLSQKLLTIPLIVDLKLAEFIRRQLYYCSPK
WLKLQEKYYQRGENLLNLTFERSFIAPLGLNLLEVFDDEIPLHKFTQIKQNINLYYENFLINFQQNSFKAVYPPRFYVIM
KKQKKDMNE

Nucleotide


Download         Length: 990 bp        

>NTDB_id=665942 MO978_RS08680 WP_289421731.1 1753305..1754294(-) (coiA) [Lactococcus lactis strain FAM 17919]
ATGTTGACAGCAATTGATGAAAATGGACAAGTAGTAAACTTATTAGAAATAGAAGTAAAAGAACTGACAGGAAAATATTT
TTGTCCTTCTTGTAAATCAGAGTTATTTATAAAAAATGGTGAAATAAAGATGCCTCACTTTGCTCATAAATCTCTCAAAG
CTTGCGACTTATGGCTTGAAAACGAATCTGAACAACATTTAGGATTAAAAAAAGCACTCTATCAATGGTTTAAAAAAACT
GATAAGGTGGAAATTGAAGCTTATATTCCTGAATTTAAGCAGAGGCCAGATTTATTGGTAAATGATACAATAGCTATTGA
AATTCAATGTTCTCATCTTTCTATGAAACGTTTAAAAGAAAGGACAGAGAATTATCAAGTCCACGGTTTTACGGTACTTT
GGCTTATGGGGGAAAATTTATGGTTAAAAGACCAAATAACAAACCTTCAAAAAAATTTAGTCTATTTTTCAGAAAATAGA
GGTTTCTATTATTGGGAATTAGATTTTAAAACTCAGAAGCTGAGATTGAAGACACTGATTCATGAAGATTTGAGTGGGAA
AATTATTTATTTACAAGAAGAAATCCCTTTTGGGCAAGGACGACTTATTGAGCAATTACGACTGCCTTTTTTATCACAAA
AGTTACTGACAATACCACTTATTGTTGATCTTAAACTAGCGGAATTTATTCGTCGGCAACTTTATTATTGTTCACCAAAA
TGGTTGAAACTTCAGGAAAAATATTACCAAAGAGGTGAAAATTTGTTGAATTTGACTTTTGAACGTTCTTTTATTGCGCC
TTTGGGGTTGAACTTACTTGAAGTTTTTGATGATGAAATCCCTTTACATAAATTTACTCAAATTAAGCAGAATATTAATC
TCTATTATGAAAACTTTTTAATAAATTTTCAGCAAAATAGCTTTAAGGCAGTCTATCCTCCCCGTTTCTATGTTATAATG
AAAAAGCAGAAGAAGGATATGAATGAATGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

73.926

99.088

0.733
  coiA Streptococcus mitis NCTC 12261

43.789

97.872

0.429
  coiA Streptococcus pneumoniae TIGR4

43.478

97.872

0.426
  coiA Streptococcus pneumoniae Rx1

43.478

97.872

0.426
  coiA Streptococcus pneumoniae D39

43.478

97.872

0.426
  coiA Streptococcus pneumoniae R6

43.478

97.872

0.426