Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG496_RS49915 Genome accession   NZ_CP108730
Coordinates   11071791..11072798 (-) Length   335 a.a.
NCBI ID   WP_405976861.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00988     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 11066791..11077798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG496_RS49910 (OG496_49815) - 11068691..11071711 (-) 3021 WP_405975658.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  OG496_RS49915 (OG496_49820) cytR 11071791..11072798 (-) 1008 WP_405976861.1 LacI family DNA-binding transcriptional regulator Regulator
  OG496_RS49920 (OG496_49825) - 11073214..11074536 (+) 1323 WP_405975659.1 extracellular solute-binding protein -
  OG496_RS49925 (OG496_49830) - 11074533..11075528 (+) 996 WP_366498296.1 sugar ABC transporter permease -
  OG496_RS49930 (OG496_49835) - 11075525..11076349 (+) 825 WP_366498297.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 35917.06 Da        Isoelectric Point: 5.6329

>NTDB_id=665941 OG496_RS49915 WP_405976861.1 11071791..11072798(-) (cytR) [Streptomyces sp. NBC_00988]
MADVAQRAGVTKQTVSNVVRGRTVVSPETRARVEAAIAELGYTPNLVARSLSTGTTMTIGFIVPTIANPFYSEVVEEVEM
LLEERGYHLLLATTRGDGDRARRQLATLSNRSVDALLVAGDFDIGEQLSPQSELELPVVLCAWEIDPPDTLPVVTIDYEK
AGYLAGRHLRELGHRQVAVIADLPAHRVRVAGVRRAFAEDGITVPDDLVFTAPGATPASGYEAALRALPQLRAAEPVTAV
FTSTDAIALGVMEVCRHQGLRVPEDISVVGIDDIPQAAHAHPPLTTVALPKRQMAREATELLWRGIANSRPAAPSLTLLR
PEVVPRASSAPPAVH

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=665941 OG496_RS49915 WP_405976861.1 11071791..11072798(-) (cytR) [Streptomyces sp. NBC_00988]
ATGGCCGACGTCGCGCAGCGCGCCGGCGTCACCAAGCAGACCGTCTCCAACGTGGTCCGGGGGCGGACGGTCGTCAGCCC
CGAGACCAGGGCGAGAGTCGAGGCCGCCATCGCCGAACTGGGGTACACACCCAACCTGGTGGCCCGGAGCCTGTCCACGG
GCACCACCATGACCATCGGCTTCATCGTGCCGACCATCGCCAACCCCTTCTACTCGGAGGTGGTGGAGGAGGTGGAGATG
CTGCTGGAGGAGCGCGGTTACCACCTGCTGCTGGCCACGACCCGGGGCGACGGGGACCGCGCCCGGCGTCAACTGGCCAC
CCTCTCCAACCGGTCGGTGGACGCGCTCCTGGTGGCCGGCGACTTCGACATCGGCGAACAGCTGTCCCCGCAGAGCGAGT
TGGAGCTGCCGGTCGTGCTGTGTGCCTGGGAGATCGATCCGCCGGACACGCTGCCCGTGGTCACCATCGACTACGAGAAG
GCCGGGTATCTGGCCGGGCGGCACCTCCGGGAGCTCGGCCACCGCCAGGTGGCGGTGATCGCGGACCTCCCGGCCCACCG
GGTCCGGGTGGCCGGCGTCCGGCGGGCCTTCGCCGAGGACGGGATCACGGTCCCCGACGACCTGGTGTTCACGGCACCGG
GAGCGACGCCCGCGTCCGGCTATGAGGCGGCGCTGCGAGCCCTGCCGCAGTTGCGTGCGGCGGAACCCGTGACGGCCGTG
TTCACCTCCACCGACGCCATCGCCCTGGGGGTGATGGAAGTCTGCCGGCACCAGGGACTCCGAGTGCCGGAGGACATCTC
GGTCGTCGGCATCGACGACATCCCCCAGGCGGCACACGCCCATCCGCCCCTGACCACGGTGGCCCTGCCGAAGCGGCAGA
TGGCCAGGGAGGCCACCGAGTTGCTGTGGCGAGGCATCGCCAACAGCAGACCGGCCGCCCCGTCCCTGACTCTCCTACGG
CCCGAGGTCGTACCCCGCGCGAGTTCCGCGCCGCCCGCCGTCCACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-45)

Periplasmic binding protein-like domain (Peripla_BP_3)

(167-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.367