Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   MPL11_RS15550 Genome accession   NZ_CP093941
Coordinates   2424492..2424626 (+) Length   44 a.a.
NCBI ID   WP_278189507.1    Uniprot ID   -
Organism   Enterococcus faecium strain NY2032     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 2423106..2424401 2424492..2424626 flank 91


Gene organization within MGE regions


Location: 2423106..2424626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPL11_RS11805 (MPL11_11805) - 2423106..2424401 (+) 1296 WP_002297218.1 ISL3-like element ISEfa11 family transposase -
  MPL11_RS15550 comA/nlmT 2424492..2424626 (+) 135 WP_278189507.1 hypothetical protein Regulator

Sequence

Protein


Download         Length: 44 a.a.        Molecular weight: 5111.98 Da        Isoelectric Point: 8.4942

>NTDB_id=665804 MPL11_RS15550 WP_278189507.1 2424492..2424626(+) (comA/nlmT) [Enterococcus faecium strain NY2032]
MAHRLSTIKEADKIVVIDEGKIVEIGTYEKLLAQKGYFYRLKNE

Nucleotide


Download         Length: 135 bp        

>NTDB_id=665804 MPL11_RS15550 WP_278189507.1 2424492..2424626(+) (comA/nlmT) [Enterococcus faecium strain NY2032]
GTGGCTCATCGGCTTTCAACGATCAAAGAGGCAGATAAAATCGTTGTGATCGATGAAGGAAAAATCGTTGAAATAGGTAC
TTACGAAAAACTGTTAGCTCAAAAAGGCTATTTCTACCGCTTGAAAAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

51.163

97.727

0.5
  comA Streptococcus mitis NCTC 12261

47.727

100

0.477
  comA Streptococcus pneumoniae Rx1

47.727

100

0.477
  comA Streptococcus pneumoniae D39

47.727

100

0.477
  comA Streptococcus pneumoniae R6

47.727

100

0.477
  comA Streptococcus pneumoniae TIGR4

47.727

100

0.477
  comA Streptococcus mitis SK321

45.455

100

0.455
  rcrQ Streptococcus mutans UA159

45.455

100

0.455
  rcrP Streptococcus mutans UA159

47.368

86.364

0.409
  comA Streptococcus gordonii str. Challis substr. CH1

36.364

100

0.364