Detailed information    

insolico Bioinformatically predicted

Overview


Name   cclA/cilC   Type   Machinery gene
Locus tag   SCSC_RS02210 Genome accession   NZ_AP014647
Coordinates   434391..435065 (-) Length   224 a.a.
NCBI ID   WP_003070165.1    Uniprot ID   A0AAD2Y4E3
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 429391..440065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS02180 (SCSC_0448) rsmD 429863..430402 (+) 540 WP_037565796.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SCSC_RS02185 (SCSC_0449) coaD 430392..430889 (+) 498 WP_003070176.1 pantetheine-phosphate adenylyltransferase -
  SCSC_RS02190 (SCSC_0450) sepM 430870..431925 (+) 1056 WP_003070174.1 SepM family pheromone-processing serine protease Regulator
  SCSC_RS02195 (SCSC_0451) - 432212..432769 (+) 558 WP_003070172.1 YutD family protein -
  SCSC_RS02200 (SCSC_0452) rlmN 432803..433885 (+) 1083 WP_006269861.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  SCSC_RS02205 (SCSC_0453) - 433878..434396 (+) 519 WP_003070167.1 VanZ family protein -
  SCSC_RS02210 (SCSC_0454) cclA/cilC 434391..435065 (-) 675 WP_003070165.1 A24 family peptidase Machinery gene
  SCSC_RS02215 (SCSC_0455) - 435216..435743 (+) 528 WP_003070162.1 Dps family protein -
  SCSC_RS02220 (SCSC_0456) - 436008..436232 (+) 225 WP_003070161.1 YqgQ family protein -
  SCSC_RS02225 (SCSC_0457) - 436226..436606 (+) 381 WP_003070160.1 rhodanese-like domain-containing protein -
  SCSC_RS02230 (SCSC_0458) - 436627..437352 (-) 726 WP_003070158.1 pseudouridine synthase -
  SCSC_RS02235 (SCSC_0459) typA 437533..439374 (+) 1842 WP_006269878.1 translational GTPase TypA -
  SCSC_RS02240 (SCSC_0460) - 439439..439717 (+) 279 WP_003070154.1 DUF3165 family protein -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 25213.52 Da        Isoelectric Point: 8.3081

>NTDB_id=66551 SCSC_RS02210 WP_003070165.1 434391..435065(-) (cclA/cilC) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MIHFYFFLVGSIVASFLGLVVDRFPEQSIITPASHCNVCGQKLAPRDLIPVLSQLINRLRCRFCNSKIPIRYILLELTGG
CLFLATSLGYLNINRLVLLAMGMTLSLYDQREQEYPLLIWLIFHIFLLFLTSFNLLMVAFLALGILAHFVDLRIGAGDFL
FLASCSTIFHLTEVLLIIQIASIIGLLLFGLKSKKDRLAFVPCLFCGSSILIMIQFIVLHQNAL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=66551 SCSC_RS02210 WP_003070165.1 434391..435065(-) (cclA/cilC) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGATTCATTTTTATTTTTTCTTGGTTGGAAGTATTGTAGCTTCCTTTTTAGGACTGGTCGTTGATCGCTTTCCTGAACA
GTCTATTATCACACCTGCTAGTCATTGCAACGTTTGTGGACAGAAATTAGCACCTCGTGATTTAATTCCTGTTCTTTCAC
AGCTTATCAATCGGCTGCGTTGCCGTTTTTGCAACTCAAAAATTCCCATCCGTTACATCCTTCTAGAACTAACTGGTGGC
TGTCTCTTTCTTGCAACATCTTTAGGTTATCTAAACATCAACCGGCTCGTTTTGCTTGCAATGGGAATGACCTTATCCCT
TTATGATCAAAGAGAACAAGAATATCCTCTCCTCATCTGGTTAATCTTTCATATTTTTCTCCTTTTTTTGACAAGCTTCA
ATCTTTTAATGGTTGCTTTTTTAGCACTTGGGATTTTGGCTCACTTCGTTGATTTACGTATCGGTGCAGGAGACTTTCTT
TTTCTGGCATCTTGCTCAACTATTTTTCATCTGACTGAAGTTCTTCTCATTATTCAAATTGCTAGTATCATTGGTCTGCT
CCTTTTTGGTTTAAAATCAAAAAAAGACAGGTTAGCCTTTGTTCCCTGTCTTTTCTGTGGTAGCAGCATCCTGATAATGA
TACAATTTATCGTTCTTCACCAAAATGCCTTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

58.491

94.643

0.554

  cclA/cilC Streptococcus mitis NCTC 12261

58.019

94.643

0.549

  cclA/cilC Streptococcus pneumoniae TIGR4

57.547

94.643

0.545

  cclA/cilC Streptococcus pneumoniae Rx1

57.075

94.643

0.54

  cclA/cilC Streptococcus pneumoniae D39

57.075

94.643

0.54

  cclA/cilC Streptococcus pneumoniae R6

57.075

94.643

0.54


Multiple sequence alignment