NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	MQG38_RS09485	Genome accession	NZ_CP093913
Coordinates	1927242..1927946 (-)	Length	234 a.a.
NCBI ID	WP_005575487.1	Uniprot ID	-
Organism	Aggregatibacter actinomycetemcomitans strain 9R
Function	require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1908691..1930656	1927242..1927946	within	0

Gene organization within MGE regions

Location: 1908691..1930656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MQG38_RS09400	ftsY	1908691..1910052 (+)	1362	WP_005548170.1	signal recognition particle-docking protein FtsY	-
MQG38_RS09405	trpS	1910227..1911231 (+)	1005	WP_005548172.1	tryptophan--tRNA ligase	-
MQG38_RS09410	ribB	1911318..1911962 (-)	645	WP_005548174.1	3,4-dihydroxy-2-butanone-4-phosphate synthase	-
MQG38_RS09415	-	1912642..1913415 (-)	774	WP_005548176.1	M48 family metallopeptidase	-
MQG38_RS09420	ppa	1913491..1914018 (-)	528	WP_005548178.1	inorganic diphosphatase	-
MQG38_RS09425	mtr	1914180..1915424 (+)	1245	WP_005548180.1	tryptophan permease	-
MQG38_RS09430	-	1915703..1916020 (+)	318	Protein_1816	DUF4298 domain-containing protein	-
MQG38_RS09435	aphA	1916402..1917109 (-)	708	WP_005548187.1	acid phosphatase AphA	-
MQG38_RS09440	hslV	1917324..1917851 (+)	528	WP_005548189.1	ATP-dependent protease subunit HslV	-
MQG38_RS09445	hslU	1917872..1919203 (+)	1332	WP_005538655.1	HslU--HslV peptidase ATPase subunit	-
MQG38_RS09450	nikA	1919269..1920852 (+)	1584	WP_005548193.1	nickel ABC transporter substrate-binding protein	-
MQG38_RS09455	-	1920951..1921694 (+)	744	WP_032996149.1	VacJ family lipoprotein	-
MQG38_RS09460	-	1921712..1922206 (+)	495	WP_005548195.1	YfbU family protein	-
MQG38_RS09465	-	1922291..1922974 (-)	684	WP_005548197.1	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	-
MQG38_RS09470	-	1923280..1924938 (+)	1659	WP_005548199.1	phospho-sugar mutase	-
MQG38_RS09475	envC	1925147..1926406 (+)	1260	WP_032999579.1	murein hydrolase activator EnvC	-
MQG38_RS09480	-	1926412..1927230 (+)	819	WP_005548203.1	divergent polysaccharide deacetylase family protein	-
MQG38_RS09485	comM	1927242..1927946 (-)	705	WP_005575487.1	ATP-binding protein	Machinery gene
MQG38_RS09490	-	1928082..1928744 (+)	663	WP_005548207.1	heteromeric transposase endonuclease subunit TnsA	-
MQG38_RS09495	-	1928737..1930656 (+)	1920	WP_258248032.1	Mu transposase C-terminal domain-containing protein	-

Sequence

Protein

Download Length: 234 a.a. Molecular weight: 26184.03 Da Isoelectric Point: 9.8867

                                >NTDB_id=665473 MQG38_RS09485 WP_005575487.1 1927242..1927946(-) (comM) [Aggregatibacter actinomycetemcomitans strain 9R]

MPLICNFDSGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQPLESGEIIISRANAKIQFPAKFQLIAAMNPSPTGHY

QGTHNRTSPQQVMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQNSGDRGESSATVREKVLKTRAIQLQRAGKINAHLNSKE

IERDCKLTDKDAQFLENALTKLGLSVRAYHRILKVSRTIADLDGEQHINQRHLAEALGYRAMDRLLQKLAKNSA

Nucleotide

Download Length: 705 bp

                                >NTDB_id=665473 MQG38_RS09485 WP_005575487.1 1927242..1927946(-) (comM) [Aggregatibacter actinomycetemcomitans strain 9R]

ATGCCACTTATTTGTAACTTTGACAGCGGCACGATCCCCAAACCGGGCGAAATTTCCCTCGCTCACAATGGCGTGCTTTT

CTTAGATGAGTTGCCCGAATTTGAACGCAAAGTGCTGGACGCGCTGCGTCAACCATTGGAAAGTGGCGAAATTATTATTT

CCCGCGCCAACGCCAAGATTCAATTTCCGGCAAAATTTCAACTGATTGCCGCGATGAATCCCAGCCCGACAGGGCATTAT

CAAGGCACGCATAATCGCACCTCACCACAACAAGTTATGCGTTATCTGAATCGGTTATCCGGCCCTTTTTTAGATCGCTT

CGATTTATCCATTGAAGTGCCCTTATTACCACAAGGCAGCTTACAAAATAGCGGCGATCGTGGCGAATCCAGCGCAACGG

TGCGAGAAAAAGTCCTGAAAACCCGTGCCATTCAACTTCAGCGCGCCGGCAAAATTAATGCCCATTTAAATAGCAAAGAA

ATCGAACGGGACTGCAAACTAACCGACAAAGACGCACAGTTCCTGGAAAATGCCCTGACTAAACTGGGGCTTTCCGTACG

AGCGTACCACCGCATACTGAAAGTGTCCCGCACCATTGCCGATTTAGATGGAGAACAACACATCAACCAGCGCCATCTGG

CCGAAGCTCTGGGTTATCGGGCAATGGACAGGTTGTTGCAAAAATTGGCGAAAAACTCGGCGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(9-118)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(128-220)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Haemophilus influenzae Rd KW20	86.957	98.291	0.855
comM	Glaesserella parasuis strain SC1401	81.034	99.145	0.803
comM	Vibrio cholerae strain A1552	67.873	94.444	0.641
comM	Vibrio campbellii strain DS40M4	65.909	94.017	0.62
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	52	96.154	0.5
comM	Legionella pneumophila str. Paris	51.869	91.453	0.474
comM	Legionella pneumophila strain ERS1305867	51.869	91.453	0.474

Detailed information NTG0665473