Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   MQG44_RS06195 Genome accession   NZ_CP093912
Coordinates   1303581..1303910 (-) Length   109 a.a.
NCBI ID   WP_005539279.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain 14R     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1298581..1308910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQG44_RS06170 serA 1299337..1300569 (-) 1233 WP_005539290.1 phosphoglycerate dehydrogenase -
  MQG44_RS06175 rpiA 1300589..1301245 (-) 657 WP_005539288.1 ribose-5-phosphate isomerase RpiA -
  MQG44_RS06180 hemW 1301344..1302513 (-) 1170 WP_005539285.1 radical SAM family heme chaperone HemW -
  MQG44_RS06185 - 1302513..1302836 (-) 324 WP_005539283.1 YbjQ family protein -
  MQG44_RS06190 rdgB 1302875..1303468 (-) 594 WP_014702506.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  MQG44_RS06195 comE1/comEA 1303581..1303910 (-) 330 WP_005539279.1 helix-hairpin-helix domain-containing protein Machinery gene
  MQG44_RS06200 ispH 1304503..1305447 (-) 945 WP_005538061.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  MQG44_RS06205 lspA 1305447..1305941 (-) 495 WP_005538058.1 signal peptidase II -
  MQG44_RS06210 ileS 1306021..1308843 (-) 2823 WP_005538052.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11355.12 Da        Isoelectric Point: 9.6912

>NTDB_id=665433 MQG44_RS06195 WP_005539279.1 1303581..1303910(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 14R]
MKAMKHLLASLFVLGSVFAGSAVAAEKAAEPAVQTEQPAATAAVGEKVNINTASAAEIQKALVGIGVKKAEAVVQYREKH
GNFSAVEQLLEVQGIGKATLDKNRDRIAL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=665433 MQG44_RS06195 WP_005539279.1 1303581..1303910(-) (comE1/comEA) [Aggregatibacter actinomycetemcomitans strain 14R]
ATGAAAGCAATGAAACATCTTTTGGCTTCGCTGTTCGTGTTAGGTTCGGTGTTTGCGGGTTCTGCCGTGGCGGCGGAAAA
AGCGGCTGAACCGGCGGTACAAACGGAGCAACCGGCGGCAACGGCAGCGGTCGGTGAGAAAGTGAATATTAACACCGCCA
GTGCTGCGGAAATTCAAAAAGCCCTTGTAGGCATCGGTGTGAAAAAAGCGGAAGCGGTAGTGCAGTATCGTGAAAAACAC
GGTAATTTCAGCGCCGTGGAGCAGTTGCTGGAAGTGCAAGGCATCGGCAAAGCGACCTTAGACAAAAATCGCGACCGTAT
CGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(46-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

59.091

100

0.596
  comEA/comE1 Glaesserella parasuis strain SC1401

51.754

100

0.541
  comEA Vibrio parahaemolyticus RIMD 2210633

44.34

97.248

0.431
  comEA Vibrio cholerae C6706

39.623

97.248

0.385
  comEA Vibrio cholerae strain A1552

39.623

97.248

0.385