Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MOQ58_RS28645 Genome accession   NZ_CP093428
Coordinates   6257920..6259413 (+) Length   497 a.a.
NCBI ID   WP_223415410.1    Uniprot ID   -
Organism   Pseudomonas migulae strain 8R6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6252920..6264413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS28615 (MOQ58_28575) - 6253359..6254696 (-) 1338 WP_008030500.1 ammonium transporter -
  MOQ58_RS28620 (MOQ58_28580) glnK 6254733..6255071 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  MOQ58_RS28625 (MOQ58_28585) - 6255490..6255750 (+) 261 WP_008030504.1 accessory factor UbiK family protein -
  MOQ58_RS28630 (MOQ58_28590) - 6256153..6256680 (+) 528 WP_280162487.1 Bro-N domain-containing protein -
  MOQ58_RS28635 (MOQ58_28595) - 6256732..6257037 (-) 306 WP_007980826.1 HigA family addiction module antitoxin -
  MOQ58_RS28640 (MOQ58_28600) - 6257046..6257324 (-) 279 WP_084320214.1 type II toxin-antitoxin system RelE/ParE family toxin -
  MOQ58_RS28645 (MOQ58_28605) comM 6257920..6259413 (+) 1494 WP_223415410.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MOQ58_RS28650 (MOQ58_28610) - 6259419..6260630 (-) 1212 WP_280162488.1 aldose 1-epimerase family protein -
  MOQ58_RS28655 (MOQ58_28615) - 6260897..6262273 (+) 1377 WP_280162489.1 SrfA family protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 52964.10 Da        Isoelectric Point: 8.0479

>NTDB_id=664671 MOQ58_RS28645 WP_223415410.1 6257920..6259413(+) (comM) [Pseudomonas migulae strain 8R6]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAALLVADARERQHKRQGCANAFLDLPGLRKHCTLSTIDETWLETACERLTLSLRSAHRLLKVARTLADLEQVDG
ITRGHLAEALQYRPTSS

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=664671 MOQ58_RS28645 WP_223415410.1 6257920..6259413(+) (comM) [Pseudomonas migulae strain 8R6]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAAATCGGCGTGGATGCGCCCGCCGTCACCGTCGAAGTCCACCTGGCCAA
CGGTCTGCCATCGCTGACCATGGTCGGTTTACCCGAAGCAGCGGTGAAGGAAAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAACTCAGGCCTGCAATTCCCGGCGCGGCGTATCACGCTGAATCTCGCCCCCGCTGATTTACCGAAGGACGGCGGACGA
TTCGATCTGGCGATTGCCTTGGGGATTCTGTCCGCCAGCGTGCAGGTGCCAACGCTGACACTGGATGATGTGGAATGCCT
GGGAGAACTGGCGCTATCAGGCGCGGTACGTGCCGTGCGAGGCGTGTTGCCGGCCGCACTGGCAGCGCGCAAGGCCGGGC
GCTCTCTGATGGTGCCGCGAGCGAATGCCGAGGAGGCTTGCCTGGCGTCGGGGTTGAAGGTGATCGCGGTGGATCATTTG
CTGGAAGCGGTCGCGCACTTCAATGGGCACACACCGGTCGAGCCTTACGTTTCCAACGGTTTGCTCTATGCCAGCAAACC
CTATCCAGACTTGAACGAAGTACAGGGCCAACTCTCGGCCAAACGCGCATTGCTGATCGCGGCGGCGGGCGCTCATAACC
TGCTGTTCAGCGGTCCACCGGGGACTGGTAAAACGCTGTTGGCGAGCCGTTTGCCGGGACTACTGCCGCCATTGGCCGAA
AACGAGGCACTGGAAGTCGCCGCCATTCAATCCGTCACCAGTTGCGTGCCCTTGAGCCACTGGCCGCAAAGGCCCTTCCG
CCAACCCCATCACTCCGCCTCCGGCCCGGCGCTGGTGGGCGGCGGTTCGAAGCCACAACCCGGCGAAATCACCCTCGCCC
ATCATGGCGTTCTATTCCTCGATGAACTGCCGGAATTCGATCGCAAGGTGCTGGAGGTTTTGCGAGAGCCGCTGGAGTCC
GGCCATATCGTGATTTCCCGTGCCAAGGATCGCGTGAGGTTTCCGGCGCGCTTTCAATTGGTGGCCGCGATGAACCCGTG
CCCCTGTGGATATCTTGGCGAACCCAGCGGCAAATGCAGTTGTACACCGGACATGGTCCAGCGCTACCGCAATAAACTGT
CGGGGCCACTGCTGGACCGTATCGACCTGCACCTGACCGTCGCCCGGGAAGCCACGGCGCTGAATCCTGCACTCAAACCC
GGCGATGACACCGCCACTGCCGCGTTGCTGGTCGCCGACGCCAGAGAGCGGCAACACAAACGCCAGGGCTGCGCGAACGC
TTTCCTTGATCTGCCGGGCCTGCGCAAACACTGCACGTTATCCACAATCGACGAAACCTGGCTGGAAACAGCGTGCGAAC
GACTGACCCTGTCGCTGAGGTCTGCGCATCGATTGCTCAAGGTCGCTCGAACCCTCGCAGACCTTGAGCAGGTCGATGGC
ATCACCCGTGGTCATCTGGCTGAAGCGCTGCAATACCGGCCAACCTCCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

52.705

100

0.529
  comM Glaesserella parasuis strain SC1401

52.4

100

0.527
  comM Legionella pneumophila str. Paris

50

100

0.501
  comM Legionella pneumophila strain ERS1305867

50

100

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.709

100

0.461