Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG510_RS04640 Genome accession   NZ_CP108660
Coordinates   1047332..1048366 (+) Length   344 a.a.
NCBI ID   WP_406135412.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01089     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042332..1053366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG510_RS04630 (OG510_04630) - 1043840..1045477 (-) 1638 WP_406135410.1 ABC-F family ATP-binding cassette domain-containing protein -
  OG510_RS04635 (OG510_04635) - 1045688..1047181 (+) 1494 WP_406135411.1 M1 family metallopeptidase -
  OG510_RS04640 (OG510_04640) cytR 1047332..1048366 (+) 1035 WP_406135412.1 LacI family DNA-binding transcriptional regulator Regulator
  OG510_RS04645 (OG510_04645) - 1048329..1049258 (-) 930 WP_406135413.1 oxygenase MpaB family protein -
  OG510_RS04650 (OG510_04650) - 1049432..1050925 (-) 1494 WP_406135414.1 alpha/beta hydrolase -
  OG510_RS04655 (OG510_04655) - 1050995..1051471 (-) 477 WP_406135415.1 hypothetical protein -
  OG510_RS04660 (OG510_04660) - 1051594..1052073 (+) 480 WP_406135416.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG510_RS04665 (OG510_04665) - 1052225..1052632 (+) 408 WP_406135417.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36655.60 Da        Isoelectric Point: 6.6637

>NTDB_id=664646 OG510_RS04640 WP_406135412.1 1047332..1048366(+) (cytR) [Streptomyces sp. NBC_01089]
MPDPTHGSRPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDRVRLAVDELGYVPNHAARTLVTRRNGAVAVIIAEPEIR
IFSDPFFSQQLRGISRELTAHDSQLVLLLVEGRKDYDRIGRYLAGGHVDGALAFSLHTEDSLPAVIHRAGIPTVFGGRPA
WAGPESGLALPYADCDNRGGARAAVRHLVSLGRRHIAHIAGPQDQTSGIDRRDGYRDVLIDVDPGLTVQGTFTAESGAAA
MSGLLERRPEVDAVFAANDLMASGALQVLREHGRRVPDDVAVVGFDDMEKVAECTDPPLTTVRQDIEGMGRLMVRMLVRG
LDGASAAAPDSVIMPTDLVRRVSA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=664646 OG510_RS04640 WP_406135412.1 1047332..1048366(+) (cytR) [Streptomyces sp. NBC_01089]
TTGCCCGATCCGACCCATGGCTCCCGGCCGACCCTGGAAGCCGTAGCGGCCCGCGCGGGTGTGTCGCGGGCGACGGCCTC
GCGTGTCGTCAACGGCGGCGCCGGGGTACGGCAGCCCCTGGTGGACCGGGTCAGGCTGGCGGTCGATGAACTGGGCTACG
TACCCAATCACGCGGCCAGGACGCTGGTCACCCGGCGCAACGGCGCGGTCGCGGTCATCATCGCGGAGCCGGAGATCCGG
ATCTTCTCGGACCCCTTCTTCTCCCAGCAGTTGCGCGGCATCAGCCGTGAACTGACCGCGCATGATTCGCAGTTGGTGCT
GCTTCTGGTGGAGGGCAGAAAGGACTACGACCGGATCGGCCGCTATCTGGCGGGCGGCCACGTGGACGGTGCGCTGGCCT
TCTCGCTGCACACCGAGGACTCGCTGCCCGCCGTGATCCACCGCGCCGGGATCCCCACGGTCTTCGGCGGCCGGCCTGCC
TGGGCGGGCCCGGAGTCCGGTCTCGCGCTGCCCTACGCCGACTGTGACAACCGGGGCGGCGCCCGCGCCGCCGTCCGGCA
TCTGGTCTCGCTCGGGCGCAGGCACATCGCGCACATCGCGGGCCCGCAGGACCAGACATCGGGGATAGACCGGCGGGACG
GCTACCGCGATGTGCTCATCGACGTCGACCCCGGGCTCACCGTGCAGGGGACCTTCACCGCGGAGAGCGGCGCCGCCGCG
ATGTCCGGGCTGCTGGAGCGGCGGCCCGAGGTGGACGCGGTCTTCGCGGCCAACGATCTGATGGCTTCGGGGGCGCTCCA
GGTCCTGCGGGAACACGGCAGACGGGTGCCGGACGATGTGGCGGTGGTGGGGTTCGACGACATGGAGAAGGTCGCCGAGT
GCACCGACCCGCCGCTGACGACGGTCCGTCAGGACATCGAGGGCATGGGGCGGTTGATGGTCCGGATGCTGGTACGCGGA
CTGGACGGCGCGAGCGCCGCCGCACCGGACTCGGTGATCATGCCGACCGATCTGGTGCGCCGGGTCTCCGCGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(185-343)

Bacterial regulatory proteins, lacI family (LacI)

(11-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.152

99.709

0.36