Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MOQ58_RS01985 Genome accession   NZ_CP093428
Coordinates   431191..432255 (+) Length   354 a.a.
NCBI ID   WP_008041861.1    Uniprot ID   -
Organism   Pseudomonas migulae strain 8R6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426191..437255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOQ58_RS01975 (MOQ58_01975) - 427002..428270 (+) 1269 WP_008025204.1 malic enzyme-like NAD(P)-binding protein -
  MOQ58_RS01980 (MOQ58_01980) - 428537..430975 (-) 2439 WP_008025203.1 penicillin-binding protein 1A -
  MOQ58_RS01985 (MOQ58_01985) comM 431191..432255 (+) 1065 WP_008041861.1 pilus assembly protein PilM Machinery gene
  MOQ58_RS01990 (MOQ58_01990) - 432255..432821 (+) 567 WP_008041859.1 PilN domain-containing protein -
  MOQ58_RS01995 (MOQ58_01995) pilO 432818..433441 (+) 624 WP_280162735.1 type 4a pilus biogenesis protein PilO -
  MOQ58_RS02000 (MOQ58_02000) - 433438..433965 (+) 528 WP_008025197.1 pilus assembly protein PilP -
  MOQ58_RS02005 (MOQ58_02005) pilQ 433979..436063 (+) 2085 WP_280162736.1 type IV pilus secretin PilQ Machinery gene
  MOQ58_RS02010 (MOQ58_02010) aroK 436068..436586 (+) 519 WP_032828585.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38011.42 Da        Isoelectric Point: 4.6907

>NTDB_id=664646 MOQ58_RS01985 WP_008041861.1 431191..432255(+) (comM) [Pseudomonas migulae strain 8R6]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPANAVVEKNIAELEGVGQALSRVLLKARTSLKNVAV
AVAGSAVITKTIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVSVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLTGHLAASREDLTVAVVDIGATMTTLSVLRNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYTSVDHILLAGGTASVPGLDRLIEERLGTSTQVANP
FSDMTLGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=664646 MOQ58_RS01985 WP_008041861.1 431191..432255(+) (comM) [Pseudomonas migulae strain 8R6]
GTGCTAGGACTCTTCAATAAAAAAGCCAATACGCTTTTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTTGAGCT
TAGCCGCCAGGGCGACCGCTATCGGGTCGAGGCTTATGCGGTAGAACCGCTACCCGCCAACGCGGTGGTCGAGAAAAATA
TCGCCGAACTCGAAGGTGTGGGTCAGGCCCTTTCACGCGTGCTGCTCAAGGCCAGAACCAGCCTCAAGAATGTGGCCGTA
GCCGTGGCCGGTTCTGCCGTCATCACCAAAACCATCGAAATGGATGCAGGTCTTTCCGACGACGAGCTGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTATCCACTGGACGAAGTCGCCATCGACTTTGAAGTACAGGGCGTATCGGCAC
GCAACCCGGAACGGGTCAGTGTGCTGCTGGCAGCCTGTCGCAAGGAAAACGTCGAAGTCCGTGAAGCGGCGCTCGCACTG
GCCGGCCTGACGGCGCGCGTGGTCGATGTCGAGGCTTACGCGCTGGAGCGCTCCTTCGGCCTGCTGACCGGGCATCTGGC
GGCGTCTCGCGAGGATCTGACGGTCGCCGTGGTCGACATTGGCGCGACCATGACCACCCTGAGCGTGCTGCGCAACGGGA
AAATCATCTACACCCGCGAACAGTTGTTCGGCGGTCGTCAACTGACGGAAGAAATCCAGCGGCGTTATGGCCTGACCGTT
GAGCAAGCGGGGCTGGCGAAGAAGCAGGGCGGTTTGCCGGACGATTACGTCAGCGAAGTGTTGCAGCCCTTCCGAGATGC
GCTGGTGCAGCAAGTGTCGCGTTCGTTGCAGTTTTTCTTCGCTTCCGGCCAGTACACCTCGGTCGACCATATCCTGTTGG
CTGGCGGCACCGCTTCAGTTCCGGGGCTGGACCGATTGATCGAGGAGCGTCTGGGCACCTCGACGCAAGTGGCCAATCCC
TTCTCCGACATGACCCTGGGCAGCAAAGTCAACGCCGGTGCCCTGGCCAGCGATGCGCCGGCGCTGATGATCGCCTGCGG
GTTAGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.215

100

0.562
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

54.237

100

0.542
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489