Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PSCI_RS05880 Genome accession   NZ_AP014637
Coordinates   1274636..1275211 (-) Length   191 a.a.
NCBI ID   WP_045484060.1    Uniprot ID   A0A077LD02
Organism   Pseudomonas sp. StFLB209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1269636..1280211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSCI_RS05860 (PSCI_1156) - 1270783..1272081 (+) 1299 WP_045484045.1 3-keto-5-aminohexanoate cleavage protein -
  PSCI_RS05865 (PSCI_1157) - 1272078..1273331 (+) 1254 WP_045484050.1 MFS transporter -
  PSCI_RS05870 (PSCI_1158) - 1273365..1273766 (+) 402 WP_045484053.1 hypothetical protein -
  PSCI_RS05875 (PSCI_1159) - 1273789..1274556 (-) 768 WP_045484056.1 TIGR01458 family HAD-type hydrolase -
  PSCI_RS05880 (PSCI_1160) ssb 1274636..1275211 (-) 576 WP_045484060.1 single-stranded DNA-binding protein Machinery gene
  PSCI_RS05885 (PSCI_1161) - 1275221..1276618 (-) 1398 WP_045484063.1 MFS transporter -
  PSCI_RS05890 (PSCI_1162) uvrA 1276747..1279581 (+) 2835 WP_045493892.1 excinuclease ABC subunit UvrA -
  PSCI_RS05895 (PSCI_1163) bfr 1279724..1280188 (-) 465 WP_045484066.1 bacterioferritin -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21325.45 Da        Isoelectric Point: 5.8104

>NTDB_id=66435 PSCI_RS05880 WP_045484060.1 1274636..1275211(-) (ssb) [Pseudomonas sp. StFLB209]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQSGQKVERTEWHRVSLFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDNQGGGNYGQSRPQQSRPAPAPQQSYDQSPQHQSYDQSPQQS
YSQPQRESRPAPKPAPQPAADFDSFDDDIPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=66435 PSCI_RS05880 WP_045484060.1 1274636..1275211(-) (ssb) [Pseudomonas sp. StFLB209]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGTACATGCGGCCAGGATCCCGAAGTCCGTTACCTGCCTAACGGCAA
CGCCGTGACCAACCTGAGTCTGGCTACCAGTGAACAATGGACCGACAAGCAGAGCGGCCAGAAGGTCGAGCGTACCGAAT
GGCACCGCGTCTCGCTGTTCGGCAAGGTCGCGGAAATTGCCGGCGAGTACCTGCGCAAAGGCTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACTCGCGAATGGGAAAAAGACGGCATCAAGCGTTATACCACTGAAATCGTCGTCGACATGCAGGGCAC
CATGCAACTGCTCGGTGGCCGTCCGCAGCAGGGCGACAACCAGGGTGGTGGCAACTACGGCCAGTCGCGCCCGCAGCAGT
CACGTCCGGCTCCGGCGCCACAGCAGTCCTACGATCAGTCACCGCAGCATCAGTCTTACGACCAATCGCCACAACAGTCG
TACAGCCAGCCGCAGCGTGAGTCGCGACCAGCGCCAAAACCGGCTCCGCAGCCGGCGGCCGACTTCGACAGCTTCGATGA
CGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077LD02

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.04

100

0.56
  ssb Glaesserella parasuis strain SC1401

49.735

98.953

0.492
  ssb Neisseria meningitidis MC58

46.875

100

0.471
  ssb Neisseria gonorrhoeae MS11

46.875

100

0.471

Multiple sequence alignment