Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MMG00_RS13625 Genome accession   NZ_CP093379
Coordinates   2961450..2962961 (+) Length   503 a.a.
NCBI ID   WP_242149319.1    Uniprot ID   -
Organism   Ignatzschineria rhizosphaerae strain HR5S32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2956450..2967961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMG00_RS13615 (MMG00_13615) - 2957368..2959560 (+) 2193 WP_242149311.1 primosomal protein N' -
  MMG00_RS13620 (MMG00_13620) - 2960350..2961129 (-) 780 WP_242149314.1 enoyl-ACP reductase -
  MMG00_RS13625 (MMG00_13625) comM 2961450..2962961 (+) 1512 WP_242149319.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MMG00_RS13630 (MMG00_13630) - 2963157..2964671 (-) 1515 WP_242149322.1 succinate CoA transferase -
  MMG00_RS13635 (MMG00_13635) - 2965048..2965617 (+) 570 WP_242149325.1 DNA-3-methyladenine glycosylase I -
  MMG00_RS13640 (MMG00_13640) - 2965617..2966369 (+) 753 WP_242149330.1 class I SAM-dependent methyltransferase -
  MMG00_RS13645 (MMG00_13645) - 2966775..2967452 (+) 678 WP_242149334.1 TIGR00730 family Rossman fold protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55565.68 Da        Isoelectric Point: 6.5617

>NTDB_id=664196 MMG00_RS13625 WP_242149319.1 2961450..2962961(+) (comM) [Ignatzschineria rhizosphaerae strain HR5S32]
MVSVIYTRALNALFAPEVRVEVHISNGLPAFTIVGMPETAVKESKDRVIAAIVNSGFEFPNRKITINLSPADLPKEGGRY
DLPIALGVLEASGQIAKDPKAFEFVGELALTGELRPITGLLPTAIQVMKHQGTLIVPEDGAEEIGFLHYSEFLMAKTLRE
VVEFIDGKQDLAKPPEVSVQRLEDPRDFSEVKGQFFAKRALEIAAAGGHNLLLIGPPGTGKTMLASRFITIMPSMTREEA
IESAMIASISRQGFRAEQFGIRPYRTPHHTASSVALVGGGTYPKPGEISLAHHGVLFLDELPEFNRSVLEVLREPLESGV
IHVSRAMQQVEFPAKFQLLSAMNPCPCGYYGDPVHECTCSDYGIARYRGRVSGPMLDRIDLHVEVPRISTEELQSSQVGE
SSKAIRQRVDNARARQMQRREKMNADLSVSEIEHDCHLGEAEIKLLEMAQKRLNFSPRSYHRILRVARTIADLEGMAEIN
SRHLTESLAFRALDRGYQSSTSS

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=664196 MMG00_RS13625 WP_242149319.1 2961450..2962961(+) (comM) [Ignatzschineria rhizosphaerae strain HR5S32]
ATGGTTTCTGTCATTTATACGCGTGCATTAAATGCACTTTTTGCCCCTGAAGTTCGTGTGGAAGTTCATATTAGCAATGG
CTTGCCGGCATTTACTATTGTTGGGATGCCAGAAACAGCGGTTAAAGAGAGTAAAGATCGGGTAATTGCGGCGATTGTTA
ATTCAGGTTTTGAATTTCCTAATCGTAAAATTACAATTAATCTATCACCTGCTGATCTTCCTAAAGAGGGGGGACGTTAT
GATCTTCCAATTGCCCTTGGAGTCTTAGAAGCATCAGGGCAGATTGCTAAAGACCCCAAAGCTTTTGAGTTTGTCGGGGA
GCTTGCATTAACGGGAGAGCTTAGGCCCATTACCGGGTTACTACCAACAGCGATACAAGTTATGAAGCATCAAGGTACTT
TAATCGTCCCTGAAGATGGTGCAGAAGAGATCGGTTTTTTGCATTATTCAGAGTTCTTAATGGCAAAAACATTAAGAGAG
GTTGTTGAGTTTATCGATGGGAAACAAGATCTTGCTAAGCCTCCTGAGGTCAGTGTGCAAAGATTGGAGGATCCTCGTGA
TTTTTCTGAAGTAAAAGGTCAGTTTTTTGCCAAAAGAGCCTTGGAGATCGCCGCTGCTGGGGGACATAATTTACTGTTGA
TAGGGCCACCTGGAACTGGCAAAACGATGTTAGCATCTCGCTTTATTACAATTATGCCGAGTATGACGAGAGAAGAAGCG
ATAGAGAGCGCGATGATTGCCTCGATTAGCCGGCAAGGGTTTCGTGCAGAGCAATTTGGAATTAGACCTTATCGAACGCC
GCACCACACAGCTTCTTCCGTGGCTTTAGTTGGAGGAGGAACTTATCCAAAACCAGGAGAGATATCGCTTGCGCATCATG
GTGTACTATTTTTAGATGAGTTACCTGAGTTTAATCGCAGTGTTTTAGAAGTGCTACGAGAGCCGTTAGAGTCTGGAGTT
ATTCATGTTTCTAGAGCAATGCAACAAGTTGAGTTTCCGGCAAAATTTCAGCTACTTTCCGCAATGAATCCTTGCCCTTG
TGGCTATTATGGTGATCCTGTACATGAGTGCACTTGCAGTGACTATGGGATAGCGAGATACCGTGGGCGAGTATCTGGTC
CGATGTTAGATCGTATTGATCTTCATGTTGAAGTCCCGAGAATTAGTACGGAAGAGCTACAAAGTAGTCAGGTAGGTGAA
AGCTCAAAGGCGATTCGCCAGCGGGTGGATAATGCGCGAGCAAGACAAATGCAAAGGCGAGAGAAAATGAATGCAGATTT
ATCGGTAAGTGAAATTGAGCATGATTGCCATCTAGGGGAGGCCGAGATCAAGCTATTAGAGATGGCGCAAAAACGCTTAA
ATTTTTCACCAAGAAGTTATCACCGAATTTTGCGCGTTGCTCGTACAATTGCAGATTTAGAAGGTATGGCTGAAATTAAT
AGCCGGCATTTAACAGAGAGTCTAGCATTTAGGGCATTAGATCGAGGTTATCAATCAAGTACTAGTTCGTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(20-138)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(187-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.113

98.807

0.515
  comM Glaesserella parasuis strain SC1401

50.992

100

0.511
  comM Vibrio campbellii strain DS40M4

50.905

98.807

0.503
  comM Haemophilus influenzae Rd KW20

49.802

100

0.499
  comM Legionella pneumophila str. Paris

49.491

97.614

0.483
  comM Legionella pneumophila strain ERS1305867

49.491

97.614

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.38

100

0.471