Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   MOO45_RS03960 Genome accession   NZ_CP093366
Coordinates   771107..773278 (+) Length   723 a.a.
NCBI ID   WP_249515084.1    Uniprot ID   -
Organism   Bombilactobacillus folatiphilus strain SG4_D2     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 766107..778278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO45_RS03940 (MOO45_03940) - 767452..768756 (+) 1305 WP_249515080.1 alpha-L-fucosidase -
  MOO45_RS03945 (MOO45_03945) - 768841..769671 (+) 831 WP_249515081.1 exodeoxyribonuclease III -
  MOO45_RS03950 (MOO45_03950) - 769693..770391 (+) 699 WP_249515082.1 nicotinamide mononucleotide transporter -
  MOO45_RS03955 (MOO45_03955) - 770464..771027 (+) 564 WP_249515083.1 hypothetical protein -
  MOO45_RS03960 (MOO45_03960) comA 771107..773278 (+) 2172 WP_249515084.1 peptide cleavage/export ABC transporter Regulator
  MOO45_RS03965 (MOO45_03965) - 773393..774064 (+) 672 WP_249515085.1 type 1 glutamine amidotransferase -
  MOO45_RS03970 (MOO45_03970) - 774051..774431 (-) 381 WP_249515086.1 hypothetical protein -
  MOO45_RS03975 (MOO45_03975) - 774428..774901 (-) 474 WP_249515087.1 alpha/beta fold hydrolase -

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 80729.28 Da        Isoelectric Point: 8.9273

>NTDB_id=664087 MOO45_RS03960 WP_249515084.1 771107..773278(+) (comA) [Bombilactobacillus folatiphilus strain SG4_D2]
MLNIKRIYTPQVDEQDCGVAALAMILKNYGSRVSLAQLRMYTKTTTAGTTAFGIKKAAEQFHLDVQAVQADLALFQTKQV
PYPFIAHVVKKGNLEHYYVVLKANKHHIAIADPNSAVKIVKMDYQQFAQEWTGVALFFQPTADYHPVQNQQRESLLQFIP
VIFKQKRLLAKIILAALIVTIISILGSYFVQSLIDTYIPQQLVNTLSIIAIGLLVAYVFQAVFSYIQNCLLAVLGQHLSV
DILLDYVRHLFELPMSFFATRKTGDVISRFNDASKITDALASSIISIGLDLTIVLLTGVVLTIQNRLLFIITLLVLPVYM
VIIWSFNKPFVKLNQKQMESNSQLNSTIIEDLHGMETIKSLSSEHQSYQKIDHEFSDVLEKSLKYIKADQLQQALKLFVQ
LGLSVVILWVGAILVVHKVLTVGQLMTFNALLTYFTNPLQNIINLQPKIKSAQVANNRLNEIYLVESEFKQSRPLQDPTL
LQGDITFNNVSYHYGYGADVVRDVSLTIPAQTKLTIVGMSGSGKSTLVKLLVDFFTPTQGQILINGHQLTAIDKMTLRQQ
IVYVPQEPYIFSGTILENLQLGNRSGVQLADVRQACQIAQIQMEIEQLPLQYETKLDENGDMLSGGQKQRLTIARALLSP
AQVLIFDESTSGLDAITEAKLVQALLCLPQTVIFIAHRLAIAQKTNNIVVLKQGKLIEQGTHQALVAQQGEYYRLLKATG
SGL

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=664087 MOO45_RS03960 WP_249515084.1 771107..773278(+) (comA) [Bombilactobacillus folatiphilus strain SG4_D2]
ATGTTGAATATCAAACGAATTTATACACCCCAAGTCGACGAGCAAGATTGTGGTGTGGCAGCATTAGCGATGATTTTAAA
AAATTATGGGTCTCGCGTTTCGTTAGCTCAATTGCGGATGTATACGAAAACTACGACGGCTGGTACCACTGCTTTTGGAA
TAAAAAAAGCAGCCGAACAATTTCACTTGGATGTTCAAGCTGTTCAAGCGGACCTGGCCTTATTTCAAACTAAACAAGTT
CCATACCCCTTTATCGCACATGTTGTGAAAAAAGGTAATTTAGAACATTATTATGTAGTGCTAAAGGCTAATAAACATCA
TATTGCCATTGCGGATCCGAATTCAGCCGTTAAAATAGTAAAAATGGATTATCAACAATTTGCACAAGAATGGACAGGGG
TGGCTTTATTTTTTCAACCAACAGCCGATTATCACCCTGTTCAGAATCAGCAGCGAGAATCTTTGTTACAATTTATTCCC
GTTATTTTTAAGCAAAAACGGCTTTTAGCTAAAATTATCTTAGCGGCTTTGATTGTCACCATCATTAGTATCCTAGGTTC
TTATTTTGTGCAGAGTTTGATTGATACATACATTCCTCAGCAACTGGTTAACACTTTGTCCATTATTGCAATAGGCTTAT
TAGTAGCCTACGTTTTCCAAGCAGTGTTTTCTTATATCCAAAATTGCTTGTTAGCTGTTTTGGGGCAACATTTATCTGTT
GATATTTTGTTGGATTATGTGCGCCATTTGTTTGAATTGCCCATGTCCTTTTTTGCCACTCGGAAGACTGGTGATGTAAT
TTCGCGCTTTAACGATGCTAGTAAAATTACCGATGCTTTAGCGAGTTCCATTATTTCGATTGGATTAGATTTGACAATTG
TTTTATTGACGGGCGTCGTATTAACAATCCAAAACCGGCTATTATTTATCATTACTTTGTTGGTATTACCTGTTTATATG
GTAATTATTTGGTCATTTAACAAGCCATTTGTGAAGTTGAATCAAAAGCAAATGGAAAGTAATTCACAATTAAATTCTAC
AATTATTGAAGATTTGCATGGTATGGAAACCATCAAATCGTTATCCAGCGAACACCAGAGTTATCAAAAAATAGACCACG
AATTTAGTGATGTCTTAGAAAAAAGTTTGAAATATATAAAAGCCGACCAATTACAGCAAGCTTTGAAGCTGTTTGTGCAA
TTAGGATTGAGTGTGGTTATTTTGTGGGTAGGAGCCATCTTGGTTGTGCACAAGGTTTTAACGGTGGGGCAATTGATGAC
TTTCAATGCTTTGTTAACGTATTTTACGAACCCGTTGCAAAATATCATTAATTTGCAACCGAAAATCAAAAGTGCTCAAG
TAGCTAATAATCGTCTCAATGAGATTTATTTAGTGGAATCTGAGTTTAAGCAATCACGCCCGCTTCAAGATCCCACATTA
TTACAAGGTGATATTACTTTTAACAATGTTAGTTACCATTATGGCTATGGTGCAGATGTAGTTCGTGATGTTTCTTTAAC
GATTCCTGCACAGACCAAATTGACGATTGTGGGTATGAGTGGCTCAGGTAAGTCCACTTTAGTCAAATTGTTGGTGGATT
TTTTTACACCAACACAGGGTCAAATTTTGATTAACGGGCACCAGCTTACGGCAATTGATAAAATGACTTTACGGCAGCAG
ATTGTTTATGTACCGCAGGAGCCATATATTTTTTCAGGTACCATTTTAGAAAATCTCCAGCTTGGTAATCGATCGGGCGT
ACAATTAGCTGATGTTCGACAAGCTTGCCAAATTGCACAAATTCAAATGGAAATTGAGCAGCTGCCTTTACAATATGAAA
CCAAATTAGATGAAAACGGTGATATGTTATCGGGCGGGCAAAAACAACGGTTAACAATTGCGCGTGCATTACTGTCGCCA
GCGCAAGTTTTGATTTTTGATGAATCAACGAGTGGTTTGGATGCTATCACGGAAGCCAAATTAGTCCAAGCGTTGCTGTG
TTTGCCTCAAACTGTGATTTTTATTGCCCATCGACTAGCGATTGCTCAAAAAACGAATAATATTGTGGTCCTAAAACAGG
GCAAACTCATTGAACAAGGAACACACCAAGCATTGGTAGCACAGCAAGGTGAGTATTATCGTTTGTTGAAGGCTACAGGA
TCAGGATTATAA

Domains

Predicted by InterproScan.

Peptidase C39 family (Peptidase_C39)

(8-142)

ABC transporter transmembrane region (ABC_membrane)

(172-439)

ABC transporter (ABC_tran)

(502-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

53.922

98.755

0.533
  comA Streptococcus mitis SK321

53.501

98.755

0.528
  comA Streptococcus pneumoniae Rx1

53.361

98.755

0.527
  comA Streptococcus pneumoniae D39

53.361

98.755

0.527
  comA Streptococcus pneumoniae R6

53.361

98.755

0.527
  comA Streptococcus pneumoniae TIGR4

53.221

98.755

0.526
  comA Streptococcus gordonii str. Challis substr. CH1

52.381

98.755

0.517
  comA/nlmT Streptococcus mutans UA159

50.989

97.925

0.499