Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   JCM16456_RS00120 Genome accession   NZ_AP014635
Coordinates   27286..28809 (+) Length   507 a.a.
NCBI ID   WP_068711303.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 22286..33809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS00105 ilvD 22796..24637 (-) 1842 WP_068711297.1 dihydroxy-acid dehydratase -
  JCM16456_RS00110 ilvM 24861..25145 (-) 285 WP_068711299.1 acetolactate synthase 2 small subunit -
  JCM16456_RS00115 ilvG 25156..26802 (-) 1647 WP_068711301.1 acetolactate synthase 2 catalytic subunit -
  JCM16456_RS00120 comM 27286..28809 (+) 1524 WP_068711303.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  JCM16456_RS00125 - 28899..29783 (+) 885 WP_068711305.1 acyltransferase -
  JCM16456_RS00130 - 29842..30441 (-) 600 WP_068711307.1 thiol:disulfide interchange protein DsbA/DsbL -
  JCM16456_RS00135 - 30482..31468 (-) 987 WP_068711309.1 serine/threonine protein kinase -
  JCM16456_RS00140 - 31609..31875 (-) 267 WP_068711311.1 YihD family protein -
  JCM16456_RS24025 - 31982..32149 (-) 168 WP_169795765.1 hypothetical protein -
  JCM16456_RS00145 - 32446..33243 (+) 798 WP_068711313.1 sporulation protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55271.16 Da        Isoelectric Point: 6.9262

>NTDB_id=66392 JCM16456_RS00120 WP_068711303.1 27286..28809(+) (comM) [Vibrio tritonius strain AM2]
MGLAIIHSRASVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIVNSNFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAAAEQIPATHLDGYEFLGELALSGDLRPVKGVLPAALAANREKRCLIVPDENGDQAALVGKDTHKSAQTL
LDVCAQLCGQKNLSLFQTNTPITASDSTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPQMSD
DEAMETASVASLTQQEINQHNWKQRPFRAPHHSSSMAALVGGGTIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARANPQVILRYLSRLSGPLLDRFDMSIEIPALPKGTLANGGDR
GESTQEVRQRVLEAREVMLERSGKVNALLQSREIERYCQLEKADAEFLESALHRLGLSIRAYHRIIKVARTIADLQGEDR
IQRVHLAEALGYRAMDRLLKQLTAQSI

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=66392 JCM16456_RS00120 WP_068711303.1 27286..28809(+) (comM) [Vibrio tritonius strain AM2]
ATGGGACTGGCGATTATCCACAGTCGAGCAAGTGTTGGGGTAGAAGCCCCTTCTGTTACTGTGGAAGTGCATATCAGCAA
TGGTATGCCTGGGTTTACCCTTGTGGGGCTTCCGGAAACCACAGTAAAAGAGTCGCGTGATCGAGTGCGCAGTGCCATTG
TTAACTCCAATTTTGAGTTTCCCGCCAAAAGAATCACGGTCAATTTGGCACCTGCGGATCTTCCTAAAGAGGGAGGTCGT
TTTGATCTGCCAATTGCATTAGGGATTTTGGCTGCGGCAGAACAAATTCCGGCAACTCATTTAGATGGCTATGAGTTTTT
AGGGGAGCTAGCACTGTCGGGCGATTTACGTCCAGTGAAGGGCGTGTTGCCTGCTGCTCTAGCGGCTAACCGCGAGAAGC
GCTGTTTAATTGTTCCAGATGAAAATGGCGATCAAGCCGCGTTAGTTGGTAAGGATACCCATAAGTCGGCGCAAACTCTT
TTAGATGTGTGCGCGCAGTTATGCGGACAGAAAAACTTATCGTTGTTTCAAACCAATACGCCGATAACAGCATCCGACTC
AACGCGAGACTTGCAAGATATTATTGGTCAGCAACAAGGCAAGCGAGCTTTGGAAATTGCTGCAGCAGGTAATCATAATT
TGCTTTTTCTGGGGCCTCCTGGCACAGGGAAAACCATGTTGGCTTCGCGCCTTTGCGATCTGTTACCACAAATGAGTGAT
GATGAAGCGATGGAAACTGCGTCAGTTGCATCCCTTACTCAGCAAGAGATCAATCAACATAACTGGAAGCAGAGACCGTT
TCGTGCTCCCCATCATTCAAGTTCCATGGCTGCTTTGGTTGGGGGAGGAACCATCCCCAGGCCCGGAGAGATTTCTCTCG
CGCACAATGGATTGCTCTTTTTAGATGAAATGCCAGAGTTTGAGCGTAAGGTGCTCGATTCACTGCGTGAGCCGCTTGAG
TCAGGAGAAATCATCATTTCACGAGCGCAGGGTAAAACACGGTTTCCAGCTCGTTTTCAGCTAGTGGGTGCACTCAATCC
TAGTCCTACAGGCTATTATGAGGGCAATCAGGCACGAGCTAATCCGCAGGTGATTCTGCGCTACTTGAGTCGTTTATCTG
GTCCATTACTGGATCGCTTTGATATGTCGATTGAGATACCGGCGCTTCCCAAAGGTACATTGGCCAATGGTGGTGACCGC
GGTGAATCTACTCAAGAAGTTCGACAGAGAGTGCTTGAGGCTCGCGAGGTGATGCTCGAGCGTTCGGGTAAGGTCAATGC
GCTACTGCAAAGTCGAGAGATTGAACGCTATTGCCAGCTAGAAAAAGCCGATGCGGAATTTTTAGAAAGCGCGTTACATC
GGCTGGGACTCTCTATTCGGGCTTATCATCGCATTATCAAGGTGGCGCGCACGATTGCCGATTTGCAGGGCGAGGATCGA
ATTCAACGAGTACATCTGGCTGAAGCACTTGGTTACCGAGCAATGGATAGGTTGTTGAAGCAGTTAACCGCACAGTCAAT
CTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

87.377

100

0.874
  comM Vibrio campbellii strain DS40M4

84.221

100

0.842
  comM Haemophilus influenzae Rd KW20

68.047

100

0.68
  comM Glaesserella parasuis strain SC1401

65.294

100

0.657
  comM Legionella pneumophila str. Paris

48.79

97.83

0.477
  comM Legionella pneumophila strain ERS1305867

48.79

97.83

0.477
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.883

100

0.446

Multiple sequence alignment