Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LRN73_RS29790 Genome accession   NZ_CP093355
Coordinates   6369095..6370588 (+) Length   497 a.a.
NCBI ID   WP_023114980.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E104     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 6364095..6375588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRN73_RS29760 (LRN73_29760) - 6364238..6365152 (-) 915 WP_003163071.1 fimbrial protein -
  LRN73_RS29765 (LRN73_29765) sutA 6365567..6365884 (-) 318 WP_003098240.1 transcriptional regulator SutA -
  LRN73_RS29770 (LRN73_29770) - 6365962..6366387 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LRN73_RS29775 (LRN73_29775) - 6366648..6367976 (-) 1329 WP_003109815.1 ammonium transporter -
  LRN73_RS29780 (LRN73_29780) glnK 6368016..6368354 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  LRN73_RS29785 (LRN73_29785) - 6368794..6369054 (+) 261 WP_003096478.1 accessory factor UbiK family protein -
  LRN73_RS29790 (LRN73_29790) comM 6369095..6370588 (+) 1494 WP_023114980.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LRN73_RS29795 (LRN73_29795) betT 6370713..6372698 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  LRN73_RS29800 (LRN73_29800) pchP 6372741..6373790 (-) 1050 WP_023088685.1 phosphorylcholine phosphatase -
  LRN73_RS29805 (LRN73_29805) - 6373941..6374858 (-) 918 WP_003161164.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53171.14 Da        Isoelectric Point: 7.7575

>NTDB_id=663907 LRN73_RS29790 WP_023114980.1 6369095..6370588(+) (comM) [Pseudomonas aeruginosa strain E104]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLLPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANDRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRAMTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=663907 LRN73_RS29790 WP_023114980.1 6369095..6370588(+) (comM) [Pseudomonas aeruginosa strain E104]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTACCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCTGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGACCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAATGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.446

100

0.563
  comM Vibrio campbellii strain DS40M4

56.338

100

0.563
  comM Vibrio cholerae strain A1552

55.936

100

0.559
  comM Glaesserella parasuis strain SC1401

54.781

100

0.553
  comM Legionella pneumophila str. Paris

49.901

100

0.507
  comM Legionella pneumophila strain ERS1305867

49.901

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.471