Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MNR01_RS10025 Genome accession   NZ_CP093341
Coordinates   2228551..2230065 (+) Length   504 a.a.
NCBI ID   WP_241917670.1    Uniprot ID   -
Organism   Lysobacter sp. S4-A87     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2223551..2235065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNR01_RS10000 (MNR01_10000) speE 2224807..2225658 (+) 852 WP_241917667.1 polyamine aminopropyltransferase -
  MNR01_RS10005 (MNR01_10005) - 2225886..2226539 (+) 654 WP_241920586.1 kinase -
  MNR01_RS10010 (MNR01_10010) - 2226529..2227671 (-) 1143 WP_241917668.1 acyltransferase -
  MNR01_RS10015 (MNR01_10015) - 2227743..2228081 (-) 339 WP_158732151.1 P-II family nitrogen regulator -
  MNR01_RS10020 (MNR01_10020) - 2228272..2228538 (+) 267 WP_241917669.1 accessory factor UbiK family protein -
  MNR01_RS10025 (MNR01_10025) comM 2228551..2230065 (+) 1515 WP_241917670.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MNR01_RS10030 (MNR01_10030) - 2230110..2230583 (-) 474 WP_241917671.1 hypothetical protein -
  MNR01_RS10035 (MNR01_10035) - 2230664..2231848 (-) 1185 WP_241917672.1 putative peptide maturation dehydrogenase -
  MNR01_RS10040 (MNR01_10040) - 2232123..2232440 (+) 318 WP_241917673.1 NHLP-related RiPP peptide -
  MNR01_RS10045 (MNR01_10045) - 2232395..2235007 (-) 2613 WP_241917674.1 putative peptide modification system cyclase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53100.94 Da        Isoelectric Point: 8.6121

>NTDB_id=663826 MNR01_RS10025 WP_241917670.1 2228551..2230065(+) (comM) [Lysobacter sp. S4-A87]
MNLALVHSRARSGVRAPAVRVEVYLAGGLPSMSIVGLPEAAVREAKDRVRAAIQCAQFEFPARRITVNLAPADLPKEGGR
FDLAIALGILAASGQVPLQALNDHEFVGELGLTGELRAIDGALPAALATAQAGRRLIVPAGNGAEAALAGRVEVRTARTL
LEVCAHLAGRKSLPLAEAVPSVRGNQPDLADVRGQAHARRALEIAAAGGHHMLLIGPPGCGKTLLASRLPGLLPDASEAE
ALEAAAIASVSGRGLDPARWRERPFRAPHHTASAVALIGGGAQPRPGEVSMAHHGVLFLDELPEWERRALEVLREPLESG
VVTVSRAARSAEFPARFQLVAAMNPCPCGWAGDACGRCRCSSESITRYRGRVSGPLLDRIDLHVEVARLPPSELRPDAPP
AEDTATVRTRVVAARELQLARGGKPNSQLGQAETASTCRLSAGDHMLLERAVDSLQLSARSMHRIMRVARTIADLAGEVS
IGTTHLTEAIGLRRAARGLEPQEA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=663826 MNR01_RS10025 WP_241917670.1 2228551..2230065(+) (comM) [Lysobacter sp. S4-A87]
GTGAACCTGGCACTCGTGCACAGCCGTGCGCGATCGGGCGTTCGCGCGCCGGCGGTTCGGGTCGAGGTCTACCTGGCCGG
CGGCCTGCCGTCGATGTCGATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAGGCCAAGGACCGGGTCCGTGCGGCGATCC
AGTGCGCACAGTTCGAATTCCCGGCGCGACGCATCACCGTCAATCTCGCCCCGGCTGACCTGCCCAAGGAAGGCGGGCGC
TTCGACCTTGCCATTGCGCTGGGGATCCTGGCCGCCAGCGGGCAGGTCCCGCTGCAGGCACTGAACGACCATGAATTCGT
CGGCGAGCTCGGCCTGACCGGCGAGCTGCGCGCGATCGACGGCGCGCTGCCGGCGGCACTGGCCACGGCGCAGGCCGGGC
GGCGGCTGATCGTCCCCGCCGGCAATGGCGCCGAGGCCGCGCTCGCCGGCCGGGTCGAAGTGCGCACCGCGCGCACGCTG
CTGGAGGTGTGCGCTCACCTGGCAGGTCGCAAGTCGCTGCCGCTGGCCGAAGCGGTGCCGAGCGTGCGCGGCAACCAACC
GGATCTGGCCGATGTGCGCGGACAGGCGCATGCGCGGCGCGCGCTGGAGATCGCCGCCGCTGGCGGTCACCACATGCTGC
TGATCGGCCCCCCCGGCTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGCTTGCTGCCGGATGCATCGGAAGCCGAG
GCGCTGGAAGCCGCGGCGATCGCCTCGGTCAGTGGCCGCGGCCTCGATCCGGCACGCTGGCGCGAGCGCCCGTTCCGCGC
GCCGCACCACACCGCAAGCGCGGTCGCGCTGATCGGCGGCGGCGCGCAACCGCGTCCGGGCGAAGTGTCGATGGCCCACC
ACGGCGTCCTGTTCCTCGACGAGCTGCCCGAATGGGAGCGGCGCGCGCTGGAGGTGCTGCGCGAGCCGCTCGAGTCGGGG
GTGGTAACTGTGTCGCGCGCGGCGCGCAGCGCCGAATTCCCGGCGCGGTTCCAACTGGTGGCGGCGATGAACCCCTGTCC
CTGTGGCTGGGCCGGCGATGCCTGCGGCCGCTGCCGTTGCAGCAGCGAGTCGATCACGCGCTATCGCGGCCGCGTATCGG
GTCCGCTGCTCGATCGCATCGACCTGCATGTGGAAGTGGCGCGGCTGCCGCCGTCGGAGTTGCGCCCGGATGCGCCGCCC
GCCGAAGACACCGCGACAGTGCGGACGCGGGTCGTGGCTGCGCGCGAGCTACAACTGGCGCGTGGCGGCAAGCCCAACTC
GCAACTCGGCCAGGCCGAGACGGCGTCGACTTGCCGGCTGTCGGCGGGTGATCACATGTTGCTGGAGCGCGCAGTCGATT
CGCTGCAGCTGTCGGCGCGTTCGATGCACCGGATCATGCGGGTGGCGCGGACGATTGCCGATCTTGCAGGCGAGGTGTCG
ATCGGCACGACACACCTGACCGAAGCGATCGGGTTGCGGCGCGCAGCGCGCGGACTGGAACCGCAGGAAGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.183

99.603

0.54
  comM Vibrio campbellii strain DS40M4

52.789

99.603

0.526
  comM Haemophilus influenzae Rd KW20

52.268

100

0.526
  comM Glaesserella parasuis strain SC1401

51.677

100

0.52
  comM Legionella pneumophila str. Paris

49.698

98.611

0.49
  comM Legionella pneumophila strain ERS1305867

49.698

98.611

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.857

100

0.435