Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MNQ95_RS05665 Genome accession   NZ_CP093331
Coordinates   1241333..1242853 (+) Length   506 a.a.
NCBI ID   WP_241954057.1    Uniprot ID   -
Organism   Pseudoxanthomonas daejeonensis strain S9-A64R     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1236333..1247853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ95_RS05640 (MNQ95_05640) speA 1237052..1238941 (-) 1890 WP_241954056.1 arginine decarboxylase -
  MNQ95_RS05645 (MNQ95_05645) speE 1239096..1239956 (+) 861 WP_162408044.1 polyamine aminopropyltransferase -
  MNQ95_RS05650 (MNQ95_05650) - 1240119..1240364 (-) 246 WP_162408045.1 SHOCT domain-containing protein -
  MNQ95_RS05655 (MNQ95_05655) - 1240529..1240867 (-) 339 WP_162408046.1 P-II family nitrogen regulator -
  MNQ95_RS05660 (MNQ95_05660) - 1241047..1241325 (+) 279 WP_162408047.1 accessory factor UbiK family protein -
  MNQ95_RS05665 (MNQ95_05665) comM 1241333..1242853 (+) 1521 WP_241954057.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MNQ95_RS05670 (MNQ95_05670) - 1243145..1245232 (+) 2088 WP_241954370.1 S9 family peptidase -
  MNQ95_RS05675 (MNQ95_05675) - 1245351..1246517 (-) 1167 WP_241954058.1 putative peptide maturation dehydrogenase -
  MNQ95_RS05680 (MNQ95_05680) - 1246599..1246916 (+) 318 WP_241954059.1 NHLP-related RiPP peptide -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 52975.47 Da        Isoelectric Point: 8.7807

>NTDB_id=663673 MNQ95_RS05665 WP_241954057.1 1241333..1242853(+) (comM) [Pseudoxanthomonas daejeonensis strain S9-A64R]
MGLALVHSRARAGIAAPPVQVEVHLSGGLPSTQIVGLPAAAVRESRDRVRAAILCAQFEYPQRRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRDALAGCEFLGELGLTGELRPIDGVLPAVLAATRAGRRLVVPAGSGAEAALARDAEAYVARTL
LEACAGLGGQTPLPRAQAAPVQGEGPNPGTAADMADVRGQAQARRALEIAAAGGHHLLMSGPPGCGKTLLASRLPGLLPE
ASEADALETAAVASISGRGFDPERWRQRPWRAPHHGASAVALAGGGSPPRPGEISLAHNGVLFLDELPEWNRAALEVLRE
PLESGRITVARAGRSAEFPARFQLVAAMNPCPCGWAGDPSARCRCTPDRIRQYWSRISGPLLDRIDLHLAMARLPPRALR
ADTPPGESSTTIRGRVVAAQARQHRRGGPLNAHLDSAALASACQLDTRSQDLLEQAGERLQLTARSLHRVLRVARTIADL
DGEGAITTAHLAEALGYRAPLHAGGR

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=663673 MNQ95_RS05665 WP_241954057.1 1241333..1242853(+) (comM) [Pseudoxanthomonas daejeonensis strain S9-A64R]
ATGGGCCTGGCGCTGGTGCACAGTCGCGCCCGCGCCGGGATCGCCGCGCCCCCGGTGCAGGTGGAAGTACACCTGTCGGG
CGGCCTGCCTTCCACACAGATCGTCGGCCTGCCGGCCGCAGCGGTGCGCGAATCGCGCGACCGCGTGCGTGCCGCGATCC
TCTGCGCGCAGTTCGAATATCCACAGCGCCGCATCACCATCAACCTGGCCCCGGCCGACCTGCCCAAGGACGGCGGCCGC
TTTGACCTGCCGATCGCCCTGGGCATCCTTGCCGCCAGCGGCCAGATCGACCGCGACGCCCTGGCCGGCTGCGAGTTCCT
CGGCGAGTTGGGCCTGACTGGCGAACTGCGACCCATCGACGGCGTGCTGCCGGCCGTGCTGGCCGCCACGCGCGCCGGGC
GCCGCCTGGTGGTGCCGGCCGGCAGCGGTGCCGAGGCGGCGCTGGCCCGCGATGCCGAGGCCTACGTCGCCCGCACCCTG
CTGGAAGCCTGCGCCGGGCTCGGAGGACAGACCCCGCTCCCGCGGGCGCAGGCGGCGCCCGTGCAAGGGGAAGGTCCGAA
CCCCGGCACCGCAGCCGACATGGCCGATGTGCGTGGCCAGGCCCAGGCCCGGCGTGCGCTGGAGATCGCCGCCGCCGGTG
GACACCATCTTCTGATGAGCGGACCGCCTGGTTGCGGCAAGACCCTGCTCGCCTCGCGCCTGCCCGGACTGCTGCCGGAG
GCCTCCGAGGCCGACGCGCTGGAGACCGCCGCGGTCGCTTCGATCAGTGGGCGCGGCTTCGATCCGGAACGCTGGCGCCA
GCGCCCCTGGCGCGCGCCCCACCACGGTGCCAGCGCGGTCGCCCTGGCCGGCGGTGGCAGCCCGCCGCGGCCGGGCGAGA
TCTCGCTGGCGCACAACGGCGTGCTGTTCCTCGATGAACTCCCCGAATGGAACCGTGCCGCGCTGGAAGTGCTGCGCGAG
CCGCTGGAATCCGGGCGGATCACCGTTGCCCGCGCCGGGCGCAGCGCCGAATTCCCCGCGCGTTTCCAGCTGGTCGCGGC
GATGAACCCCTGCCCGTGCGGCTGGGCGGGCGACCCGTCCGCGCGCTGCCGCTGCACGCCGGACCGGATCCGGCAGTACT
GGAGCCGGATCTCCGGGCCATTGCTCGATCGCATCGACCTGCACCTGGCCATGGCCCGGCTGCCGCCACGCGCGTTGCGC
GCCGACACGCCGCCGGGTGAGTCCAGCACGACGATCCGCGGACGCGTGGTCGCCGCGCAGGCGCGCCAGCACCGGCGCGG
CGGTCCGCTCAACGCCCATCTGGACTCCGCGGCCCTGGCGTCCGCATGCCAGCTCGATACGCGAAGCCAGGACCTGCTCG
AACAGGCCGGCGAACGCCTGCAGCTGACCGCGCGCAGCCTGCACCGGGTACTGCGCGTGGCCCGCACCATCGCCGACCTC
GATGGCGAGGGCGCCATCACCACGGCCCACCTGGCCGAAGCACTGGGCTATCGCGCGCCGTTGCACGCCGGTGGTCGTTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.2

98.814

0.536
  comM Vibrio campbellii strain DS40M4

53.307

98.617

0.526
  comM Haemophilus influenzae Rd KW20

51.786

99.605

0.516
  comM Glaesserella parasuis strain SC1401

52.096

99.012

0.516
  comM Legionella pneumophila str. Paris

50.497

99.407

0.502
  comM Legionella pneumophila strain ERS1305867

50.497

99.407

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.262

99.605

0.421