Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MNO11_RS00765 Genome accession   NZ_CP093323
Coordinates   164193..165716 (-) Length   507 a.a.
NCBI ID   WP_241921531.1    Uniprot ID   -
Organism   Serratia plymuthica strain B37/06     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 159193..170716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO11_RS00740 (MNO11_00740) ytfR 159353..160867 (+) 1515 WP_073439659.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  MNO11_RS00745 (MNO11_00745) ytfT 160885..161886 (+) 1002 WP_006328791.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  MNO11_RS00750 (MNO11_00750) yjfF 161883..162875 (+) 993 WP_013814974.1 galactofuranose ABC transporter, permease protein YjfF -
  MNO11_RS00755 (MNO11_00755) hdfR 162880..163707 (-) 828 WP_062869036.1 HTH-type transcriptional regulator HdfR -
  MNO11_RS00760 (MNO11_00760) - 163827..164165 (+) 339 WP_004951725.1 DUF413 domain-containing protein -
  MNO11_RS00765 (MNO11_00765) comM 164193..165716 (-) 1524 WP_241921531.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MNO11_RS00770 (MNO11_00770) - 166058..167290 (+) 1233 WP_062869034.1 MFS transporter -
  MNO11_RS00775 (MNO11_00775) ilvL 167424..167522 (+) 99 WP_013814970.1 ilv operon leader peptide -
  MNO11_RS00780 (MNO11_00780) ilvG 167665..169311 (+) 1647 WP_166729174.1 acetolactate synthase 2 catalytic subunit -
  MNO11_RS00785 (MNO11_00785) ilvM 169308..169565 (+) 258 WP_004951714.1 acetolactate synthase 2 small subunit -
  MNO11_RS00790 (MNO11_00790) ilvE 169588..170514 (+) 927 WP_013814968.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54509.91 Da        Isoelectric Point: 7.8116

>NTDB_id=663566 MNO11_RS00765 WP_241921531.1 164193..165716(-) (comM) [Serratia plymuthica strain B37/06]
MSLAVIYTRATMGVQAPSVTVEVHISNGLPGLTMVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADQLARYEFLGELALSGALRGVSGAIPAALAAMDAGRQLILASANGKEVGLIAQSESRVAEHL
LEVCAFLLGKGDLPGASAPAPAEPRQEPADLQDILGQEQAKRVLEIAAAGGHNLLLVGPPGTGKTMLASRLNGLLPPLTD
REALESVAVASLLHHPAETLPWRQRPFRAPHHSASMVALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVCFPARVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLGRLSGPFLDRFDLSIEVPLLPPGVLSKKRAG
GESSIQVRERVLQARERQLCRAGKINALLSNPEVERDCTLSAPDADFLETTLNKLGLSVRAWQRILKVARTLADLAGDRD
IDKRHLSEALGYRCMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=663566 MNO11_RS00765 WP_241921531.1 164193..165716(-) (comM) [Serratia plymuthica strain B37/06]
ATGTCACTGGCGGTTATCTATACCCGGGCAACGATGGGCGTTCAGGCCCCTTCGGTGACGGTCGAAGTACATATCAGTAA
CGGGCTACCCGGCCTGACCATGGTCGGTCTGCCGGAAACTACAGTGAAAGAAGCCCGCGATCGGGTACGCAGCGCGTTGA
TCAACAACGGTTTCACCTTTCCCGCCCGACGCATCACCGTCAACCTGGCTCCAGCCGATCTTCCCAAAGAGGGCGGCCGT
TACGATCTGCCTATTGCCCTGGCAATCCTCGCCGCCTCCGAACAGTTGCCGGCCGATCAGCTGGCGCGCTATGAGTTCCT
TGGGGAGCTGGCGCTCTCCGGCGCTCTGCGGGGAGTAAGCGGCGCGATACCGGCCGCGTTGGCGGCAATGGATGCCGGAA
GACAGCTGATTCTGGCGTCAGCCAATGGTAAGGAAGTGGGTCTGATTGCACAGAGTGAAAGCCGGGTTGCGGAACATCTG
CTGGAAGTGTGCGCCTTTCTGTTGGGCAAAGGCGATTTACCGGGGGCCAGCGCCCCGGCTCCCGCCGAACCCCGGCAGGA
ACCCGCCGATTTGCAGGATATTCTGGGCCAGGAACAGGCCAAGCGTGTGCTGGAGATCGCCGCAGCAGGGGGGCATAACC
TGTTGCTGGTCGGCCCGCCGGGTACCGGGAAAACCATGTTGGCCAGCCGCCTGAACGGCCTGCTGCCACCGCTGACCGAC
CGGGAGGCGCTGGAAAGCGTGGCCGTAGCCAGCCTGCTGCATCACCCTGCCGAAACGCTGCCATGGCGCCAGCGGCCATT
TCGCGCACCGCATCACAGCGCCTCAATGGTTGCGCTGGTCGGCGGTGGCTCACTGCCGCGGCCGGGGGAAATCTCCATGG
CGCACAACGGCGTACTGTTTCTGGACGAGTTGCCGGAATTCGAACGGCGCGTGCTGGATGCCCTGCGTGAACCGCTGGAG
TCTGGCGAAATCGTCATTTCACGCGCCAGCGCCAAGGTTTGTTTCCCGGCCAGGGTGCAGTTGATCGCCGCAATGAATCC
CAGCCCGACAGGACACTACCAGGGCATGCATAACCGCGCGTCGCCGCAACAGGTCCTGCGCTATCTCGGGCGGCTTTCAG
GGCCGTTTCTCGATCGTTTCGATTTATCGATTGAGGTACCGTTGCTGCCGCCAGGCGTGCTCAGTAAAAAGCGCGCCGGA
GGAGAAAGCAGCATTCAGGTACGTGAACGGGTATTGCAGGCGCGTGAAAGGCAACTCTGCCGGGCAGGAAAAATCAACGC
CCTGTTGAGTAATCCCGAAGTCGAACGGGATTGTACGCTCAGCGCACCGGATGCCGATTTTCTTGAGACGACGTTAAACA
AGTTGGGATTATCGGTTCGTGCCTGGCAACGAATTTTAAAAGTGGCACGCACGCTGGCGGATTTGGCGGGGGATCGGGAT
ATTGATAAGCGCCACCTGAGCGAAGCGCTTGGCTACCGTTGTATGGACCGACTGTTGCTGCAGCTGCACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

64.892

100

0.649
  comM Vibrio campbellii strain DS40M4

63.347

99.014

0.627
  comM Vibrio cholerae strain A1552

63.347

99.014

0.627
  comM Legionella pneumophila str. Paris

50.4

98.619

0.497
  comM Legionella pneumophila strain ERS1305867

50.4

98.619

0.497
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.275

100

0.465