Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG770_RS34920 Genome accession   NZ_CP108587
Coordinates   7807650..7808669 (-) Length   339 a.a.
NCBI ID   WP_405697158.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01185     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7802650..7813669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG770_RS34915 (OG770_34860) - 7804199..7807480 (+) 3282 WP_405698177.1 LamG-like jellyroll fold domain-containing protein -
  OG770_RS34920 (OG770_34865) cytR 7807650..7808669 (-) 1020 WP_405697158.1 LacI family DNA-binding transcriptional regulator Regulator
  OG770_RS34925 (OG770_34870) - 7808883..7809713 (+) 831 WP_405697160.1 phytanoyl-CoA dioxygenase family protein -
  OG770_RS34930 (OG770_34875) - 7809852..7812203 (-) 2352 WP_405697162.1 AbfB domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35812.84 Da        Isoelectric Point: 6.0531

>NTDB_id=663539 OG770_RS34920 WP_405697158.1 7807650..7808669(-) (cytR) [Streptomyces sp. NBC_01185]
MAARLKDVAALAGVSVRTVSNVVSNAAAVAPATRARVMAAVEELDYRPNLAARNLRQGRTGLIGVVVPEIHSPYFGALAG
LLIDAAQERGWTVLLERTGGRPELERRLLDGSGGHQLDGMIISPWSTSPADLASLAGGLPLVVLGELEPDGTIDHVALDN
VGAARDAARHLVARGRRRIAAIGLQSGLGHGTAELRAEGFRHGLREAGLSPVAEVEVADLHRAEGARALRHLLELPEPPD
AVFCFSDELALGALRVAAEQGVRVPEDLALMGFDDIEDGRFAAPSLTTVAPDREQIAERAVQCLTERVFGRLDTLPARRI
VVPHRVLGRESTGGPASPV

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=663539 OG770_RS34920 WP_405697158.1 7807650..7808669(-) (cytR) [Streptomyces sp. NBC_01185]
GTGGCAGCGAGACTCAAGGACGTCGCCGCGCTCGCCGGCGTGTCCGTCCGGACCGTCTCCAACGTGGTGAGCAACGCCGC
GGCCGTGGCCCCGGCAACGCGCGCCCGGGTCATGGCGGCGGTGGAGGAACTCGACTACCGCCCCAACCTCGCCGCCCGCA
ACCTCCGGCAGGGGCGCACGGGTCTCATCGGTGTGGTCGTGCCCGAGATCCACTCCCCCTACTTCGGCGCGCTGGCCGGT
CTCCTCATCGACGCGGCACAGGAGCGCGGCTGGACGGTGCTCCTGGAGCGGACCGGGGGACGTCCCGAGCTGGAACGGCG
GCTCCTCGACGGGTCCGGGGGGCACCAGCTCGACGGGATGATCATCAGCCCCTGGTCCACCTCCCCGGCCGATCTGGCCT
CACTCGCCGGGGGTCTGCCGCTGGTGGTCCTGGGCGAGCTGGAGCCGGACGGGACCATCGACCATGTCGCCCTGGACAAC
GTGGGGGCGGCCAGGGACGCCGCACGCCATCTGGTCGCGCGGGGCCGCCGGCGCATCGCGGCGATCGGCCTGCAGTCCGG
ACTGGGCCACGGCACGGCGGAACTGCGCGCGGAGGGGTTCCGTCACGGGCTGCGGGAGGCCGGCCTGAGCCCGGTGGCCG
AGGTAGAGGTGGCCGACCTCCACCGGGCGGAGGGGGCGCGGGCGCTGCGTCACCTGCTGGAGCTGCCCGAGCCGCCCGAC
GCCGTCTTCTGCTTCAGCGACGAGCTCGCCCTCGGTGCTCTGCGCGTCGCGGCCGAACAGGGCGTGCGGGTGCCGGAGGA
CCTGGCGCTGATGGGGTTCGACGACATCGAGGACGGCAGATTCGCCGCCCCGTCCCTCACCACGGTCGCCCCGGACCGGG
AGCAGATCGCCGAGCGGGCGGTGCAGTGCCTGACCGAGCGCGTCTTCGGACGCCTCGACACCCTGCCCGCACGGCGGATC
GTGGTCCCGCACCGTGTGCTGGGGCGCGAGAGCACCGGAGGCCCGGCCTCCCCCGTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.07

100

0.363